Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_P11
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.3  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.3  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   3.1  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   4.0  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   5.3  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   9.3  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   9.3  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 GTVSSTFDHPFSTPVLRSYWHRNQ 294
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 GTVSSTFDHPFSTPVLRSYWHRNQ 294
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 226  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 390
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 807  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866

Query: 391  SFRP*PQNTSHS 426
               P P+  SHS
Sbjct: 867  YLEPEPERRSHS 878


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 226  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 390
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 391  SFRP*PQNTSHS 426
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 254 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 358
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 226  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 390
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 391  SFRP*PQNTSHS 426
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
 Frame = +3

Query: 534 PPSPGDLGYINPIIKSPNSIHQPPQT*HP-----FPSIP*TPY*KEFAPGLKPPLSSXAP 698
           PP P    Y+    +   +   PP   +P      P+ P  PY +   P   PPL+S   
Sbjct: 30  PPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQ 89

Query: 699 SAYLTPS 719
           +A   P+
Sbjct: 90  NAVPVPA 96


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 584  EFHTPTTPDLTSISINPLNAVLKGVRA 664
            +F TP TP L+  +I  L+ VLK +RA
Sbjct: 1016 DFFTPDTPRLSPSAIQDLDKVLKKIRA 1042


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 742  TPLAMPSDEGVR--YADGA-SDDNGGFNPGANSF*YGVQGIDGNGC*V-WGGWCMEFGDL 575
            +P   P + GV   YA  A S   GG +PGA     G    DG       GGW       
Sbjct: 1498 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAG--NTDGGASPFNEGGWSPASPGD 1555

Query: 574  MIGLM*PRSPGEGGL 530
             +G + PR+P  GG+
Sbjct: 1556 PLGALSPRTPSYGGM 1570


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 742  TPLAMPSDEGVR--YADGA-SDDNGGFNPGANSF*YGVQGIDGNGC*V-WGGWCMEFGDL 575
            +P   P + GV   YA  A S   GG +PGA     G    DG       GGW       
Sbjct: 1505 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAG--NTDGGASPFNEGGWSPASPGD 1562

Query: 574  MIGLM*PRSPGEGGL 530
             +G + PR+P  GG+
Sbjct: 1563 PLGALSPRTPSYGGM 1577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,092
Number of Sequences: 27780
Number of extensions: 363834
Number of successful extensions: 1121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)