Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P06
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 242 5e-65
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 167 2e-42
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 140 2e-34
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 133 2e-32
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 132 8e-32
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 130 3e-31
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 129 5e-31
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 124 2e-29
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 124 2e-29
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 121 1e-28
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 120 2e-28
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 116 5e-27
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 113 3e-26
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 112 5e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 109 3e-25
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 95 8e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 93 4e-20
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 89 5e-19
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 62 4e-18
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 85 1e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 76 7e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 75 9e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 66 4e-12
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 49 9e-07
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 37 0.004
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.048
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 33 0.064
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.79
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 29 1.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 1.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.8
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 7.4
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 7.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.7
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 242 bits (592), Expect = 5e-65
Identities = 114/232 (49%), Positives = 166/232 (71%)
Frame = +3
Query: 24 VLWVLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRML 203
++ L +GGL +K QE LR+ PDIVIATPGR IDH+RN+ F + +IE++V+DEADRML
Sbjct: 359 IMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
Query: 204 DEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQ 383
++ FA+++ EII+ C RQTMLFSATM+++V DL +SL +PV++FV++ K A L Q
Sbjct: 419 EDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ 478
Query: 384 EFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGAL 563
EFVR+R +RE R AML L F RT++F ++K AH++ V+ G+L + A E+HG+L
Sbjct: 479 EFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSL 538
Query: 564 NQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+Q QR+ +L+ FR+ + + L+ATDVA RG+DI G+ VIN+ T Y+H
Sbjct: 539 SQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 167 bits (406), Expect = 2e-42
Identities = 90/234 (38%), Positives = 137/234 (58%)
Frame = +3
Query: 18 IGVLWVLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADR 197
IGV V+ VGG+D+ Q L + P +++ TPGRL+DH+ NT F L +++ L++DEADR
Sbjct: 141 IGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADR 200
Query: 198 MLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNL 377
+LD F + +I++ +R+T+LFSATM+ +V+ L SL +PV++ V+S L
Sbjct: 201 LLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTL 260
Query: 378 RQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHG 557
Q ++ + ++ L LV + ++F +T RL ++L LG A LHG
Sbjct: 261 IQRYLFFPFKH---KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHG 317
Query: 558 ALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
L+Q RL +L +F+ LVATDVA RGLDIP V+ VIN+ + YIH
Sbjct: 318 QLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 140 bits (339), Expect = 2e-34
Identities = 90/240 (37%), Positives = 134/240 (55%), Gaps = 12/240 (5%)
Frame = +3
Query: 36 LSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPS---FGLHSIEVLVLDEADRMLD 206
L VGG+D+ Q L + P +V+ATPGRL D IR+ GL I+ LV+DEADR+L
Sbjct: 108 LIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
Query: 207 EYFAEQMKEI--IRQCSPKRQTMLFSATMSEEVKDLA---AVSLKKPVKLFV--NSNKEV 365
FA+ + + + S RQT+LF+AT+++ ++ L + K P+ L+ N V
Sbjct: 168 PTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISV 227
Query: 366 AFNLRQEFVRIRKERECDREAMLAALVC--RTFRDRTVVFVQTKRQAHRLHVMLGMLGVK 539
L+Q ++ + + REA L L+ + ++FV R A ++ +L +L ++
Sbjct: 228 PSTLQQSYIFVSSQV---REAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELR 284
Query: 540 AAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
ELH + Q +R++SL RFR + +LVATDVA RGLDIP V VINF L YIH
Sbjct: 285 VTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIH 344
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 133 bits (322), Expect = 2e-32
Identities = 74/230 (32%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Frame = +3
Query: 42 VGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 221
+GG + + + L + ++++ATPGRL+DH++NT F ++ LV+DEADR+L+ F +
Sbjct: 196 IGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFED 255
Query: 222 QMKEIIRQC-SPKRQTMLFSATMSEEVKDLAAVSLKK-PVKLFVNSNKEVAF--NLRQEF 389
+M++I++ S RQT+LFSAT + +V+DLA +SLK P+ + V+S K + L Q +
Sbjct: 256 EMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGY 315
Query: 390 VRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQ 569
V + ++ R +L + + R + + +VF+ + + +L + + +LHG Q
Sbjct: 316 VVVDSDK---RFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQ 372
Query: 570 PQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+R ++ F + +L+ T+VA RGLDIP V+ ++ + YIH
Sbjct: 373 QRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 132 bits (318), Expect = 8e-32
Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 11/250 (4%)
Frame = +3
Query: 3 LGSVLIGV-LWVLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLV 179
L S++ G L + V G K +++ +N ++I TPGRL+D I N S + LV
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLI-NDGSIDCSQVGYLV 314
Query: 180 LDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSATMSEEVKDLAAVSLKKPVKLF 344
LDEADRMLD F + ++ II + RQT+ FSAT E V+ LAA LK PVK+
Sbjct: 315 LDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKIT 374
Query: 345 VNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFR-----DRTVVFVQTKRQAHRL 509
+ S++ A + V I + +E ML L+ + D+ ++FV K++A R+
Sbjct: 375 IGSDELAASQNITQIVEILDDPR-SKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARV 433
Query: 510 HVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFT 689
L +HG ++Q RL +L F+ + VLVATDVA RGLDIP V VIN T
Sbjct: 434 EGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVT 492
Query: 690 LXGTLXHYIH 719
T+ Y+H
Sbjct: 493 FPLTIEDYVH 502
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 130 bits (313), Expect = 3e-31
Identities = 85/229 (37%), Positives = 122/229 (53%), Gaps = 4/229 (1%)
Frame = +3
Query: 45 GGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ 224
GG D++ Q + Q D++ ATPGRL+D I + L +I+ LVLDEADRMLD F Q
Sbjct: 291 GGADIRAQIRQIDQGCDLLSATPGRLVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQ 349
Query: 225 MKEIIRQCS----PKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFV 392
++ I+ +RQT++FSAT +++ LA LK V L V + N+ Q+ V
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVV 409
Query: 393 RIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQP 572
+ + R +L L T++FV+TKR A L L A +HG Q
Sbjct: 410 HVEDSEK--RSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467
Query: 573 QRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+R +L+ FR + ++VAT VA RGLDIP V VIN+ L + Y+H
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 129 bits (311), Expect = 5e-31
Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 4/239 (1%)
Frame = +3
Query: 15 LIGVLWVLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPS--FGLHSIEVLVLDE 188
L+ + + GG +K Q + L++ +IV+ TPGR+ID + LH LVLDE
Sbjct: 517 LLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDE 576
Query: 189 ADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVA 368
ADRM D F Q+ II P RQT+LFSAT ++ LA LKKPV++ V VA
Sbjct: 577 ADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVA 636
Query: 369 FNLRQEFVRIR-KERECDR-EAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKA 542
+ Q V +R +E + R +L L RT+VFV + A L L G +
Sbjct: 637 SEVEQ-IVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTS 695
Query: 543 AELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+HG +Q R ++ ++ DVL+AT V RGLD+ + V+N+ + Y+H
Sbjct: 696 NSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 124 bits (299), Expect = 2e-29
Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 4/232 (1%)
Frame = +3
Query: 36 LSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYF 215
L +GG + K ++ L + +I++ TPGRL+ HI +F +++L+LDEADR+LD F
Sbjct: 144 LIIGGNNYKEEKERLSRM-NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
Query: 216 AEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKP--VKLFVNSNKEVAFNLRQEF 389
+ I+ RQTMLFSAT ++ VKDLA +SL+ P + + N NL Q +
Sbjct: 203 RTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFY 262
Query: 390 VRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGML--GVKAAELHGAL 563
+ + + D +L + + +T+VF+ + +Q ++ + G+ LHG
Sbjct: 263 LTVPLTEKLD---ILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQ 319
Query: 564 NQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
Q R + +F + VL TD+ RGLD P V+ VI + YIH
Sbjct: 320 KQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 124 bits (299), Expect = 2e-29
Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 3/228 (1%)
Frame = +3
Query: 45 GGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ 224
GG+ Q L + +I IATPGRL+D + + + L + LVLDEADRMLD F Q
Sbjct: 231 GGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQ 289
Query: 225 MKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRK 404
+++I+ Q P RQT++FSAT +EV+ LA L +++ V S A + ++ V +
Sbjct: 290 IRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVD 349
Query: 405 ERECDREAMLAALVCRTFRDR---TVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQ 575
D+ A L + +DR ++F TKR A + L G A +HG Q +
Sbjct: 350 N--ADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDE 407
Query: 576 RLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
R L FR + ++VATDVA RG+D+ G+ V N+ G Y+H
Sbjct: 408 RDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 121 bits (291), Expect = 1e-28
Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 19/253 (7%)
Frame = +3
Query: 18 IGVLWVLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADR 197
+G V VGG + Q + Q IV+ATPGRL+D + F L +V+DEADR
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERR-LFVLSQCTYVVMDEADR 410
Query: 198 MLDEYFAEQMKEII-------------------RQCSPKRQTMLFSATMSEEVKDLAAVS 320
MLD F + + +I+ S +RQT++FSAT+ V +LA
Sbjct: 411 MLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSY 470
Query: 321 LKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQA 500
L +PV L + + + + Q I + + R L F ++FV KR
Sbjct: 471 LIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVE-EILESNRFSPPIIIFVNLKRNI 529
Query: 501 HRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVI 680
+ L +G A LHG+ +Q QR ++++ R + D+LVATD+AGRG+DIP V+ V+
Sbjct: 530 EAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVL 589
Query: 681 NFTLXGTLXHYIH 719
N+ + ++ Y H
Sbjct: 590 NYNMAKSIEDYTH 602
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 120 bits (290), Expect = 2e-28
Identities = 69/230 (30%), Positives = 134/230 (58%), Gaps = 5/230 (2%)
Frame = +3
Query: 45 GGLDVKYQESVLR---QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY- 212
GG+++K + ++P IV+ATPGRL +R ++S++ VLDE D++L+
Sbjct: 156 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVD 214
Query: 213 FAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFN-LRQEF 389
++E+ R P++Q M+FSAT+S E++ + ++ P++++V+ ++ + L+Q +
Sbjct: 215 MRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 274
Query: 390 VRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQ 569
V++ +E+ +R+ + L+ ++ V+FV++ +A+ L +L + +HG L Q
Sbjct: 275 VKL-EEKAKNRK--INDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQ 331
Query: 570 PQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+R+ K F++ + VATDV GRG+DI VN VIN+ + + Y+H
Sbjct: 332 EERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 116 bits (278), Expect = 5e-27
Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 1/227 (0%)
Frame = +3
Query: 42 VGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 221
+GG V+ + L+ +V+ TPGR+ D I+ + ++++ VLDEAD ML F +
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRR-ALPTDAVQMFVLDEADEMLSRGFKD 180
Query: 222 QMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIR 401
Q+ +I + P Q +L SATM ++V ++ ++ P+++ V ++ ++Q +V +
Sbjct: 181 QIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVE 240
Query: 402 KER-ECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQR 578
KE + D L V T + V+F T+R+ L L + +HG ++Q QR
Sbjct: 241 KEEWKLDTLCDLYETVTVT---QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQR 297
Query: 579 LDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+ FR +L+ TD+ RG+D+ V+ VIN+ L +YIH
Sbjct: 298 DTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 113 bits (272), Expect = 3e-26
Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 25/254 (9%)
Frame = +3
Query: 33 VLSV-GGLDVKYQESVLRQNPDIVIATPGRLIDHIR-NTPSFGLHSIEVLVLDEADRMLD 206
V+S+ GGL V+ Q+ +L ++P +V+ATPGRL I N + I+ LVLDEADR+L
Sbjct: 223 VMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQ 282
Query: 207 EYFAEQMKEIIR----QCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSN-----K 359
+ E++ +++ +RQT +FSAT E ++ ++K + NS K
Sbjct: 283 KSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLK 342
Query: 360 EVAFNLRQEFVRIRKER-----------EC---DREAMLAALVCRTFRDRTVVFVQTKRQ 497
EV F + +F+ + EC +++ L L+ R + +T+VF
Sbjct: 343 EVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMR-YPGKTMVFANGIED 401
Query: 498 AHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTV 677
R+ L L V + LH L+Q +RL SL++F+ VLV TDVA RG+DIP V V
Sbjct: 402 IKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHV 461
Query: 678 INFTLXGTLXHYIH 719
I++ + T Y+H
Sbjct: 462 IHYHVPHTADMYVH 475
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 112 bits (270), Expect = 5e-26
Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 4/235 (1%)
Frame = +3
Query: 27 LWVLSVGGLDVKYQESV--LRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRM 200
L ++ + + K QE LR+ D+ I TP RL+ I+ SF +E V+DEADR+
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLSF--EKVEFFVMDEADRL 201
Query: 201 LDEYFAEQMKEIIRQCSPKRQTM-LFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNL 377
+ F EQ I+ C+ LFSAT+ V++LA V P+++ V ++
Sbjct: 202 FEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSI 261
Query: 378 RQEFVRIRKERECDREAMLAALVCR-TFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELH 554
Q + + + + +L ++ + R V+FVQ +A L+ L + +H
Sbjct: 262 DQRLLFVGSDTS--KIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIH 319
Query: 555 GALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
G L Q +R ++L +FR+ + VL+ATD+ RG+D GV VINF ++ YIH
Sbjct: 320 GELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 109 bits (263), Expect = 3e-25
Identities = 65/226 (28%), Positives = 113/226 (50%)
Frame = +3
Query: 42 VGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 221
+GG V L +V TPGR+ D IR + ++++L+LDEAD +L++ F E
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRR-NLRTRNVKMLILDEADELLNQGFKE 182
Query: 222 QMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIR 401
Q+ +I R P Q ++ SAT+ ++V ++ PV++ V ++ L+Q F+ +
Sbjct: 183 QIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVE 242
Query: 402 KERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRL 581
KE + L L + V+F ++R+ L + +HG + Q +R
Sbjct: 243 KEEW--KFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERD 300
Query: 582 DSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
++ FR+ VL+ TD+ RG+D+ V+ VIN+ L +YIH
Sbjct: 301 AIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 95.5 bits (227), Expect = 8e-21
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 7/240 (2%)
Frame = +3
Query: 21 GVLWVLSVGGLDVKYQESVLRQ-NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADR 197
G+ ++GG +E+ +R+ N +++IATPGRL DH++N S + +LDEADR
Sbjct: 140 GIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADR 199
Query: 198 MLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLF--VNSNKEVA 368
++D FAE + I + K + + FSATM +V ++ L KL ++ N+
Sbjct: 200 LMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPT 259
Query: 369 FNLRQEFVRIRKERE--CDREAMLAALVCRTFRDRTVVFVQTKRQAHRL-HVMLGMLGVK 539
+FV K + ++L L R +VF+ T + V+ L +
Sbjct: 260 HERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIP 319
Query: 540 AAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
LH L QR + FR+ Q +L ATDV RG+D P + V+ T YIH
Sbjct: 320 CFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 93.1 bits (221), Expect = 4e-20
Identities = 52/138 (37%), Positives = 81/138 (58%)
Frame = +3
Query: 33 VLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY 212
V VGG+ ++ Q S+L PDIV+ATPGR + H++ L SIE +V DEADR+ +
Sbjct: 171 VAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMG 229
Query: 213 FAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFV 392
FA Q+ EI+ RQT+LFSAT+ + D A L+ PV + ++ +V+ +L+ F
Sbjct: 230 FAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFF 289
Query: 393 RIRKERECDREAMLAALV 446
+ + +REA L ++
Sbjct: 290 SV---KTAEREAALLCIL 304
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/86 (36%), Positives = 50/86 (58%)
Frame = +3
Query: 462 DRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQXDVLVATDVA 641
D T+VFV TK + +L G ++++G+L+Q RL+ + FR + ++LV TDVA
Sbjct: 347 DSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVA 406
Query: 642 GRGLDIPGVNTVINFTLXGTLXHYIH 719
RG+DIP + VIN+ ++H
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVH 432
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 89.4 bits (212), Expect = 5e-19
Identities = 61/207 (29%), Positives = 105/207 (50%)
Frame = +3
Query: 66 QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ 245
Q +L PDIVIATP R + H+ + L ++ LV+DEAD ML + E MK + R
Sbjct: 133 QRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRS 191
Query: 246 CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDRE 425
Q+ L SAT+S+ + L + + P L V +KE + L Q V+ ++ +
Sbjct: 192 LPRGTQSFLMSATLSKNIASLQKLVCRNPFILAV-KDKEASGKLTQYVVKCSEQDKFLLA 250
Query: 426 AMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFRE 605
+L L R + + ++FV + +RL + L G+K+ L+ L RL L+++ +
Sbjct: 251 YILLKL--RLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNK 308
Query: 606 QQXDVLVATDVAGRGLDIPGVNTVINF 686
+++ATD +G +I + ++F
Sbjct: 309 GLYQIIIATDESGMMGEIEELENNVDF 335
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 645 RGLDIPGVNTVINFTLXGTLXHYIH 719
RGLD V V+NF + YIH
Sbjct: 388 RGLDFENVACVLNFDMPSNTKSYIH 412
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.1 bits (144), Expect(2) = 4e-18
Identities = 26/56 (46%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +3
Query: 93 DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PK 257
D++++TPGRL+DHIRN SF L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 262 DVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
Score = 44.8 bits (101), Expect(2) = 4e-18
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Frame = +3
Query: 261 QTMLFSATMSEEVKDLAAVSLKKPVKLFV-NSNKEV-----------AFNLRQEFVRIRK 404
Q ++FSAT++ + +A++ L P + V N + EV F++
Sbjct: 353 QKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHV 412
Query: 405 ERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGML------GVKAAELHGALN 566
++ +L L+ + FV++ A RLH +L ++ +L+
Sbjct: 413 SVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLS 472
Query: 567 QPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
+ +R + RF ++LV +D+ RG+D+ VIN+ ++ Y+H
Sbjct: 473 RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 84.6 bits (200), Expect = 1e-17
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 6/209 (2%)
Frame = +3
Query: 72 SVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS 251
S +NP +VI TPGRL + + + S +E+L+LDEAD ++D F ++ II Q
Sbjct: 127 SFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIISQLP 183
Query: 252 PKRQTMLFSATMSEEVKD-LAAVSLKKPVKLFVN-SNKEVAFNLRQEF-VRIRKERECDR 422
+R+T LFSATM++ V L L+ V++ V ++K++ ++ +
Sbjct: 184 KQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYK 243
Query: 423 EAMLAALVCRTFRDRTVVFVQTKRQAHRLH--VMLGMLGVKAAELHGALNQPQRLDSLKR 596
+ L+C ++ +VF + + + L + LHG Q R + ++
Sbjct: 244 VQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEK 303
Query: 597 FRE-QQXDVLVATDVAGRGLDIPGVNTVI 680
F++ + VL TD+A RGLDIP V+ V+
Sbjct: 304 FKKSNKKTVLFTTDIASRGLDIPNVDFVL 332
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 75.8 bits (178), Expect = 7e-15
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 1/200 (0%)
Frame = +3
Query: 96 IVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR-QTML 272
IVI TPG ++D ++ I+V VLDEAD MLD+ I+ P+ Q +L
Sbjct: 233 IVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 291
Query: 273 FSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCR 452
FSAT SE V+ A ++ + + + ++Q ++ + E + +L L
Sbjct: 292 FSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH--KYNVLVELYGL 349
Query: 453 TFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQXDVLVAT 632
++++F + K A + + G A L G L QR + FR VLV T
Sbjct: 350 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT 409
Query: 633 DVAGRGLDIPGVNTVINFTL 692
+V RG+D+ VN V+N+ +
Sbjct: 410 NVIARGIDVSQVNLVVNYDM 429
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 75.4 bits (177), Expect = 9e-15
Identities = 57/229 (24%), Positives = 97/229 (42%)
Frame = +3
Query: 33 VLSVGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY 212
+++ GG ++ L IV+ TPGR++D + V+DEAD++L
Sbjct: 144 MVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPE 202
Query: 213 FAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRQEFV 392
F +++++ RQ L+SAT VK+ L KP + +N E+ ++
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYE--INLMDELTLRGVTQYY 260
Query: 393 RIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQP 572
E + + L L + +++++F + + L + LG H + Q
Sbjct: 261 AFVDESQ--KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQS 318
Query: 573 QRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
R FR LV +D+ RG+DI VN VINF Y+H
Sbjct: 319 HRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 66.5 bits (155), Expect = 4e-12
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 16/120 (13%)
Frame = +3
Query: 30 WVLS---VGGLDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRM 200
W++S +GG K +++ +R+ +I+I TPGRL DH+ NT + + + +VLDE DR+
Sbjct: 247 WIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRL 306
Query: 201 LDEYFAEQMKEII----RQCS--------PKRQ-TMLFSATMSEEVKDLAAVSLKKPVKL 341
+D F E + +I+ Q S P R+ TML SATM + VK L+ +LK + L
Sbjct: 307 MDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYL 366
Score = 45.6 bits (103), Expect = 8e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 549 LHGALNQPQRLDSLKRFREQQXD---VLVATDVAGRGLDIPGVNTVINFTLXGTLXHYIH 719
LHG+L+Q R +L F + +L+ TDVA RGLD+P V+ V+ + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 48.8 bits (111), Expect = 9e-07
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Frame = +3
Query: 417 DREAMLAALVCRTFRD----RTVVFVQTKRQAHRLHVMLGMLG---VKAAEL--HGALNQ 569
D+ L L+ T+R RTV+FV+ K A L + + L ++A HG +Q
Sbjct: 343 DKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQ 402
Query: 570 PQ-------RLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXHYI 716
+ + D+L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 403 GEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +3
Query: 393 RIRKERECDR---EAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGAL 563
+++KE + ++ E A L + R T+VF + ++ LG+ A L G
Sbjct: 240 KLKKEAQSEKAIFEIPRAWLEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGET 299
Query: 564 NQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVI 680
N +R ++ FR+++ VLV V G DIP ++ ++
Sbjct: 300 NDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.048
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 465 RTVVFVQTKRQAHRLHVMLG----------MLGVKAAELHGALNQPQRLDSLKRFREQQX 614
R ++FV+ + A + LG +G A ++Q + +++K+F++ +
Sbjct: 434 RIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEV 493
Query: 615 DVLVATDVAGRGLDIPGVNTVI 680
+ L+AT + GLDI V+ +I
Sbjct: 494 NTLIATSIGEEGLDIGEVDMII 515
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 32.7 bits (71), Expect = 0.064
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 441 LVCRTFRDRTVVFVQTKRQAHRLHVMLGM-LGVKAAELHGALNQPQRLDSLKRFREQQXD 617
++ FR+ T ++ T A R V + +G + +NQ Q+ +++ +FR +
Sbjct: 475 MIFTEFRN-TAEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVIN 533
Query: 618 VLVATDVAGRGLDIPGVNTVI 680
LVAT + GLDI + +I
Sbjct: 534 TLVATSIGEEGLDIGDTDMII 554
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 531 GVKAAELHGALNQPQRLDSLKRFREQQXDVLVATDVAGRGLDIPGVNTVINFTLXGTLXH 710
G+KA H L + +R ++ ++VAT G G+D V VI+ + +L
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 711 Y 713
Y
Sbjct: 827 Y 827
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 423 EAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLK 593
+A + ++C+T V K H L + L + +K + +HG+ + + ++S+K
Sbjct: 1335 QAQMFNIICKTVLIDMNVLSAQKEMLHTLWLKLMDVAIKLSSIHGSESMAEVMESIK 1391
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 150 FGLHSIE---VLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVKDLAAV 317
F +HS + VLDE D LD+ ++ IRQ S Q ++ S K A V
Sbjct: 1146 FAIHSYQPSPFFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALV 1205
Query: 318 SLKKPVKLFVNSNKEVAFNLRQEFVRIRK 404
+ + + NS++ ++ N+R F I K
Sbjct: 1206 GIYRDQQ--ENSSRTLSINVRDYFFLILK 1232
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 166 SRFWCWTKLTGCWMNT 213
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 299 DFLAHGGREQHGL--TFRGTLTDD 234
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +3
Query: 147 SFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLK 326
S G+ + E L D D + +E + +++ Q + SAT EEVK VS K
Sbjct: 463 SLGVFNYE-LKEDNDDLCTENDSSEGDSDSLKKVDFLGQIAMMSATDREEVKSSIVVSTK 521
Query: 327 KPVKLFVNSNKEVAF 371
K L E+ F
Sbjct: 522 KSTILEFAKEIEIIF 536
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 156 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKK 329
L E+L+LDE LD + + IR + T++ + MS+ D + + K
Sbjct: 586 LRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDK 643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,872
Number of Sequences: 5004
Number of extensions: 57322
Number of successful extensions: 223
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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