Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P05
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 44 3e-05
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 30 0.35
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.4
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 3.2
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 3.2
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 27 3.2
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 3.2
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 27 4.3
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 7.4
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 7.4
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.8
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 9.8
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Frame = +3
Query: 90 VMLKQKLFDEDSADEV---TFKTENEYAKKYDSWREKEELHKLEQKYGDK----VLXXXX 248
V K L +E S+++ +F+ EYAK+++ +++EEL KLE KYG++ V
Sbjct: 39 VTSKSHLLEESSSEDEEINSFQINEEYAKRFEHNKKREELQKLEAKYGEQMANGVDGEGS 98
Query: 249 XXXXXXXXXXXXXXXXXXXMERQFLKTLALLKTKDPRIYNPSFKFFE 389
++ L+ + ++ KDP +Y+ K+F+
Sbjct: 99 DESSSEEEEDSDGELVTPEVDAAILRMIVKIRNKDPDLYDSQQKYFD 145
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 30.3 bits (65), Expect = 0.35
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 21 RVLMKFINLQLMK*IRVAFIEIIVMLKQKLFDEDSADEVTFKTENEYAKKYDSWREKEEL 200
++ MK I L+ ++ + ++ K L ++ + K E EY ++ RE E L
Sbjct: 256 QLFMKGIQLKQLEENYSLIEQSLINTKNVLGNKKTGVSYLAKKEEEYKLLWEQSRETENL 315
Query: 201 HK-LEQKYGDKV 233
H LEQK G+ V
Sbjct: 316 HNLLEQKKGEMV 327
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 114 DEDSADEVTFKTENEYAKKYDSWREKEEL 200
+E+SADEV F+TE E ++ R+KEEL
Sbjct: 645 NEESADEVDFQTERE-----ENARKKEEL 668
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 178 ESYFFAYSFSVLNVTSSAESSSNNFCFSITIISMNATLIYF 56
E+Y Y +L VTS ++ NN C +I ++ L+Y+
Sbjct: 260 ENYLAKYD-KILVVTSHSQDFLNNVCTNIIDLTSKKQLVYY 299
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 75 FIEIIVMLKQKLFDEDSADEVTFKTENEYAKKYDSWREKEELHK 206
F E L+Q + A V +KT NE A+ + W E E H+
Sbjct: 399 FYENFDDLEQSRIIFEKATHVPYKTVNELAQVWIDWAEMELRHQ 442
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 99 KQKLFDEDSADEVTFKTENEYAKKYDSWREKEELHKLEQK 218
K ++ D DE + + ++ + + + +E+EEL K E+K
Sbjct: 337 KNLAYESDEEDEDPYASSHDASSEEEVLQEEEELQKREEK 376
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 498 KKALELDTTEDKPENNINHISEEGKLKDYLTGKSEHIDXAVEQEL 632
K+ LEL+ T D + + E KL+DYLT ++ V QE+
Sbjct: 668 KRILELEETTDFKNQEVFKQTIE-KLEDYLTNSKQYDANVVLQEI 711
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 144 KTENEYAKKYDSWRE-KEELHKLEQKY 221
K + EYA Y++W E E+L +E KY
Sbjct: 7 KLQMEYASSYETWLEAAEKLDVIEGKY 33
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 519 TTEDKPENNINHISEEGKLKDYLTGKSEHIDXAVEQELAP 638
TTE ENN N+ ++ KLK L+G++ L+P
Sbjct: 130 TTERIIENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSP 169
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 477 GKIFTIEKKALELDTTEDKPENNI 548
GK F+I K E + KPENN+
Sbjct: 712 GKNFSIFGKTAETQVEQKKPENNV 735
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 141 FKTENEYAKKYDSWREKEELHKLEQKYGDK 230
FK + + K + K+E+ KLE KY K
Sbjct: 409 FKEQQDSVTKQRIEKAKQEIEKLEAKYNSK 438
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 139 VTSSAESSSNNFCFSITIISMNATLI---YFISCKFINFISTRV 17
VT SS +N CFS+ +S TLI + + K ++ RV
Sbjct: 693 VTVMKPSSISNTCFSLRDVSFEPTLIKRHFLVPPKGATYVEIRV 736
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 99 KQKLFDEDSADEVTFKTENEYAKKYDSWRE 188
K D +SAD+ E+E +KKY S R+
Sbjct: 173 KSDNLDSESADDSDLADESELSKKYTSDRK 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,040
Number of Sequences: 5004
Number of extensions: 42112
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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