Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_P05
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622...    33   0.36 
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099...    32   0.63 
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    31   1.5  
05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464...    29   5.9  
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155     28   7.8  
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    28   7.8  
03_01_0068 - 546475-546615,546709-546819,547449-547482,547582-54...    28   7.8  

>09_06_0327 +
           22359524-22359602,22359732-22359835,22362073-22362272,
           22362359-22362459,22362551-22363005,22363079-22363645
          Length = 501

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 332 KSFKELSLHFLRHLGWPITFIFT 264
           K+ K+L L   RH GWP T++FT
Sbjct: 216 KAMKDLGLARARHFGWPNTYVFT 238


>08_02_0085 +
           12108474-12108552,12108656-12108759,12109726-12109925,
           12110003-12110103,12110184-12110379,12110584-12110745,
           12110856-12110937,12111741-12112004,12113047-12113174,
           12113795-12113957
          Length = 492

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 332 KSFKELSLHFLRHLGWPITFIFT 264
           ++ KEL L   +H GWP T++FT
Sbjct: 218 RTMKELGLKRAKHFGWPNTYVFT 240


>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 332 KSFKELSLHFLRHLGWPITFIFT 264
           K+ KEL L   RH GW  T++FT
Sbjct: 220 KAMKELGLARARHFGWSNTYVFT 242


>05_07_0182 +
           28243881-28245406,28245460-28245505,28246309-28246400,
           28246513-28246635,28246753-28246984
          Length = 672

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 318 IVSPFPQTPRVAHHFHLHYPKTLGYQS*APCLHIFVPIYVILP 190
           ++ PFP  P   HH H   PK+L   +  P LH   P+ ++ P
Sbjct: 6   LLLPFPSPPATLHH-HPPPPKSLFLGASLPLLHPPPPLRLLRP 47


>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
          Length = 871

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
 Frame = -3

Query: 211 SNLCNSSFSRHESYFFAYSFSVLNVTSSA---------ESSSNNFCFSITIISMNATLIY 59
           S +   S S H S  +  S SV  +T S          + SSNN    +     N T++Y
Sbjct: 385 SGVLPDSLSNHSSSLWFLSLSVNEITGSIPKDIGLENLDLSSNNLSGQVPKFFGNITILY 444

Query: 58  FISCKFINFI 29
           +++  F +F+
Sbjct: 445 YLNLSFNSFV 454


>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 220 YFCSNLCNSSFSRHESYFFAYSFSVLNVTSSAESSSNN 107
           +FC    N  ++R ++++  Y + ++ +    ESS  N
Sbjct: 339 HFCGVTANKEYAREDTHYLLYIYDLMRLRLVKESSDEN 376


>03_01_0068 -
           546475-546615,546709-546819,547449-547482,547582-547673,
           547904-548062,548178-548251,548477-548551,548820-548903,
           548981-549110
          Length = 299

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 489 TIEKKALELDTTEDKPENNINH-ISEEGKLKDYLTGKS-EHI---DXAVEQELAPLKALW 653
           T E +A EL   ED+    I   +SEEGK +D   GK+ E +   + A   +LA +   W
Sbjct: 213 TYEHEAAELAGWEDEQIEFIREKVSEEGKREDLKKGKAPEQVVLDEAAFLMDLASVDGNW 272

Query: 654 SD 659
            D
Sbjct: 273 DD 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,462
Number of Sequences: 37544
Number of extensions: 236534
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)