Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_P04
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical ...    32   0.57 
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.3  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.3  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.0  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    28   7.0  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    28   7.0  

>AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical
           protein E04A4.1 protein.
          Length = 333

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 540 PLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKASGCHQXLHQRI 707
           P  +     +SSN  FH     DL   S+   NA L+  R G+KA   H  +   I
Sbjct: 8   PFQLLKLPQKSSNYVFHRMLVADLIGFSLTSKNAKLQTKRLGLKAEDVHLEIRSGI 63


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 585  FHTPTTPDLTSISINPLNAVLKGVRAGVKASGCHQ 689
            F TP TP L+  +I  L+ VLK +RA    +G +Q
Sbjct: 1017 FFTPDTPRLSPSAIQDLDKVLKKIRAKTHYTGWNQ 1051


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,921
Number of Sequences: 27780
Number of extensions: 351532
Number of successful extensions: 1090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)