Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P02
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 33 0.36
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.1
03_04_0006 + 16257288-16259522 30 2.5
02_05_0132 - 26109152-26109852,26109962-26110358 30 2.5
06_03_1448 + 30235336-30236763 29 3.4
06_03_1443 + 30182018-30183445 29 3.4
06_03_1440 + 30166515-30167942 29 3.4
06_03_1437 + 30151030-30152457 29 3.4
06_03_1429 + 30100834-30102261 29 3.4
06_03_1425 + 30084383-30085810 29 3.4
06_03_1420 - 30053713-30055140 29 3.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.4
01_06_0235 - 27747908-27749023 29 4.4
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.9
01_03_0105 + 12604125-12604583 29 5.9
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 28 7.8
>01_06_0456 + 29521282-29522064
Length = 260
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -1
Query: 526 SPAWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 398
S AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 10 SRAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 124 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 270
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 331 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 179
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0132 - 26109152-26109852,26109962-26110358
Length = 365
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 634 IKPAXALLLPREVSVLAELPLGHLGYSXTDVPPQSNSPAWQCPRTGSRG 488
IK + LL + L + H+G+S PP + AW P GS G
Sbjct: 195 IKSSNVLLDANHDAKLCDFGFAHVGFSAAVRPPSGATRAWGRPVMGSPG 243
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 525 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 388
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 331 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 206
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>01_06_0235 - 27747908-27749023
Length = 371
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 561 VILXQMYRPSQTPPPGSVLEPDHAGV 484
VI+ +RP + PPP +L P HA V
Sbjct: 342 VIVGGSWRPLEAPPPQCMLPPSHAPV 367
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 453 TTLHAWNETPCARRYY 406
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_03_0105 + 12604125-12604583
Length = 152
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 625 AXALLLPREVSVLAEL--PLGHLGYSXTDVPPQSNSPAWQCPRTGSRG 488
A AL LP ++ L + GH G + D PP S SP+ +C G+ G
Sbjct: 2 AAALTLPPSLATLWPVRPQRGHFGATIGDPPPSSPSPS-RCVAVGAYG 48
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 558 ILXQMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASAQP 379
I ++ S+ PP +VL + VL D++ L+A E+P + P TAS P
Sbjct: 397 IAKKLQTASENPPTFAVLS-SRSDVLPEDQKEHPAANLNAQIESPEDHKEVDPTTASGIP 455
Query: 378 S 376
S
Sbjct: 456 S 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,364,142
Number of Sequences: 37544
Number of extensions: 496242
Number of successful extensions: 1483
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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