Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P01
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 38 0.001
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.11
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.76
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 27 2.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 7.1
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 7.1
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 9.4
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 463 EFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVI 606
+ AE A +GP+ + LA KY + I+ E++EK S+I++N+ + I
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYI 106
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 689 HGKVTPGHPVFATRYGKIAVNICF 760
H K P+F T +GK+ V IC+
Sbjct: 128 HFKKGSDFPIFETSFGKLGVMICW 151
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 503 KVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKRMMLTPSWPATSMIFLTLLKIAFFCS 324
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 323 LTGR 312
L GR
Sbjct: 290 LFGR 293
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 475 SAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 585
SAE+ + + + +++VS++LE DEKH D++
Sbjct: 979 SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVV 1015
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 285 NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 175
++S N++R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 674 VKIXDSRNVVLCDASRSRF-RCH*MTTAVFQSMSECFSSLSNIEDTITIAYLMASSRRKV 498
+KI + +V CD SR R R A+F ++ F + + D + LM +++R
Sbjct: 461 IKIFEVSDVAFCDYSRERMTRNERHLCAIFAGLNSGFEQIHGLLDRV---MLMLNTKR-- 515
Query: 497 VVGPSSADS 471
++ P +D+
Sbjct: 516 IMNPKDSDA 524
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 4.0
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -2
Query: 456 RLLLPCAEREGHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 277
R LL C +R P +L DV ++DD + F+ T GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163
Query: 276 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 109
+ H+S V+ E + L DR K++ P N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 94 NNLTGRDLEEFNRIHFGRRNNLEI 165
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 174
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 423 HIPQLLETDDVNTLLAGNIDDLLDFIENC 337
++P+LLE D+N L G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,261
Number of Sequences: 5004
Number of extensions: 64982
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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