Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P01
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 156 2e-38
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 32 0.60
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 31 0.79
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176... 31 1.0
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.2
03_02_0198 + 6344952-6347483 29 4.2
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 156 bits (379), Expect = 2e-38
Identities = 90/186 (48%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIIRFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+ Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 589 NTAVVI 606
NTAVVI
Sbjct: 206 NTAVVI 211
Score = 59.7 bits (138), Expect = 3e-09
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = +2
Query: 617 GNVIGKHRKEPHSESRXF*RIQLLHGKVTPGHPVFATRYGKIAVNICFXRHHVLNWM 787
GN+IG HRK F + + GHPVF T YGKI VNIC+ RHH LNW+
Sbjct: 215 GNIIGIHRKNHIPRVGDF-NESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWL 270
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIIRFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILE 558
VI S E
Sbjct: 91 VIPVSFFE 98
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 397 IRFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 570
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSI--PER 68
Query: 571 HSDILWNTAVVI 606
S L+NT VI
Sbjct: 69 SSGRLFNTCCVI 80
>12_02_0967 -
24916352-24916402,24916662-24916717,24917602-24917685,
24917751-24918251,24918520-24919207
Length = 459
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Frame = -2
Query: 744 AIXPYLVAKTGWPGVTFPCSSWIR*-NXRLSECGSLRCFPITFPVSLNDN--RSVPKYVR 574
A+ Y+VAK WP V + I + + C + P + N + K
Sbjct: 70 AVAGYVVAKASWPDVRLRAAMIITFVSGSIKYAERTLCLYLASPEKVRSNAQNDLSKLQT 129
Query: 573 MLLVPF*YRGHDHHCVLDGEFPKEGRGRPVFS*FGKLAPRLLLPCAEREGHIPQLLE 403
P + C+L+G +P GR F AP+ +L +P +L+
Sbjct: 130 PDFQPSSLTSYVFDCILEGRYPGNDSGRRETYFFSVDAPQNMLQSTTCANDVPGILQ 186
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 461 HHGCFSLVQNAKGIFHNSWKRMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>03_02_0198 + 6344952-6347483
Length = 843
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Frame = -3
Query: 746 PRSXRIWSRKQDGPXLPSHVVVGFVKIXDSRNVVL-CDASRSRFRCH*MTTAVFQSMSEC 570
P + +WS PS + D N+V+ +A+RSR R TT +
Sbjct: 103 PSNTLLWSSNASASSSPSPPRTTVATLQDDGNLVVNSNATRSRSRSPSSTTTTHVA---- 158
Query: 569 FSSLSNIEDTITIAYLMASSRRKVVVG--PSSADSANSHHGCFSLVQNAKGI 420
+ S + DT + R + V S DS N G FS+V +A+G+
Sbjct: 159 WQSFDHPTDTWLPGARLGYDRGRGVHSFLTSWTDSENPAPGAFSMVIDARGL 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,505,826
Number of Sequences: 37544
Number of extensions: 455539
Number of successful extensions: 1248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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