Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_O22
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 29 0.58
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 27 3.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 5.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 9.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 9.5
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/76 (22%), Positives = 29/76 (38%)
Frame = +3
Query: 483 GPRRGRHSGTHAGRVALDSTSNAPPSSRSLEKELSLPRVVATMLGSDASXKAMLDFCXST 662
G H+G H R S S PP+ RS E+ + P++ + + D
Sbjct: 22 GTNETDHTGFHEKRQGASSESLIPPAQRSSEESMPAPKLFPKLTSKPNPQLNLKDTLNKR 81
Query: 663 ISQKEAAXXKKENSSF 710
+S + A ++ F
Sbjct: 82 VSDRLQALELNKSFDF 97
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPP 184
PP PPRSN P PP+ A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 252 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 94
PP SNY A P+ P++ A PP S R R+ P + PG + G
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 93 SDRPDRDRALRTSQRRDV 40
S RP A R + DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATSALGGKGAPAKV*FERGGST 259
G+ D P PS R C H G+ + + +TGG + G G A V F R GS
Sbjct: 14 GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68
Query: 260 LGGPC 274
L C
Sbjct: 69 LVISC 73
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 420 TPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRS 241
TP+ +HL+ + P+ + + D D Q P++Q R EP S
Sbjct: 104 TPLNNKHLKSQD--------QPLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSS 154
Query: 240 NYTFAGAPFPP 208
N+ + PFPP
Sbjct: 155 NHVRSCPPFPP 165
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 19 CHALTRENVAALRRPQRAIAVRAIRG 96
C LT EN++A R Q AVR + G
Sbjct: 1017 CKLLTHENISASHRQQLQSAVRNVLG 1042
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Frame = -2
Query: 390 PEGEASAVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 232
P AS + ++ PV E + +G R RQ R R P PRV P Y
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270
Query: 231 FAGAPFPPRAEVATPPVIGS 172
+PP A P GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 38 RTSRRCDVRSARSRSGRSEDTAPSP 112
RT++R DVR SRS R T+ P
Sbjct: 159 RTAQRLDVRRPASRSSRYSKTSDLP 183
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 377 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 267
H PT++ R R + + R + +RRD+ + D
Sbjct: 38 HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 59 VRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPI 181
VRS+ S S S+DT PS G + T R R+L +
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLNKPTIERERNLKL 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,421
Number of Sequences: 5004
Number of extensions: 43902
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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