Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_O19
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 539 SPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP 634
           SP  +  +   ++SP     PP    P P IP
Sbjct: 390 SPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 659 APG-LKPPVGHQRLHQRISPPR 721
           +PG ++PP  HQ+L Q+   P+
Sbjct: 113 SPGYVQPPTKHQKLDQKFIFPQ 134


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 734  PCPSDEGXRYADGASDDQPEALTPARTPFSTAFRGLMEMD 615
            P PSD G       +DD  + LT   TP S +  G  + D
Sbjct: 1379 PSPSDRGR------NDDGSDRLTSPPTPLSISRAGSRDED 1412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,764
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)