Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_O14
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   183   3e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   183   3e-47
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  183 bits (445), Expect = 3e-47
 Identities = 84/129 (65%), Positives = 93/129 (72%)
 Frame = +3

Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHR 143

Query: 534 IEKIPELPL 560
           IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 35/58 (60%), Positives = 50/58 (86%)
 Frame = +2

Query: 629 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGXLIIFNKDQGLXRAFRXIPGVELLNV 802
           KA+ D++KV  S++LRAGKGK+RNRR +QR+G L++FN+D G+ +AFR IPGVE++NV
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNV 232


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  183 bits (445), Expect = 3e-47
 Identities = 84/129 (65%), Positives = 93/129 (72%)
 Frame = +3

Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHR 143

Query: 534 IEKIPELPL 560
           IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152



 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 35/58 (60%), Positives = 50/58 (86%)
 Frame = +2

Query: 629 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGXLIIFNKDQGLXRAFRXIPGVELLNV 802
           KA+ D++KV  S++LRAGKGK+RNRR +QR+G L++FN+D G+ +AFR IPGVE++NV
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNV 232


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -2

Query: 118 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 41
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 535  LKRFPSFPWVVAD 573
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -1

Query: 572 SATTQGKLGNLFNNVSSSLNE 510
           SAT+  +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 HIIEKIPELPLGCSRQSPRDQQDQTGCH 611
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,001
Number of Sequences: 5004
Number of extensions: 56722
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)