Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_O11
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.50 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 553 ACPNDQSFRLLKYVLSMKLLRGSWGCSVCR 464
           A P D +  + +YV+  K+ +GSW   + R
Sbjct: 897 AAPYDGNSPIKRYVIEYKISKGSWETDIDR 926



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 406  GNSPLKRPISDY-VKSGF--INVDKPSNPSSHEVVSWI 510
            GNSP+KR + +Y +  G    ++D+   P S + V+ +
Sbjct: 902  GNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGV 939


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 361 RSFSTTKASKRCPASSRSP 305
           + FS++   +R P+SSRSP
Sbjct: 26  KRFSSSIVDRRSPSSSRSP 44


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 29  LNRNRTCYMAEHCVI 73
           +NRNR  Y+A  C +
Sbjct: 154 MNRNRPAYLASKCAL 168


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 478 NPSSHEVVSWIKRI 519
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 478 NPSSHEVVSWIKRI 519
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 72  ITQCSAI*HVRFRLRLASRFVC 7
           IT+CSAI      L++   F C
Sbjct: 101 ITECSAISDTNVHLKITKIFQC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,699
Number of Sequences: 438
Number of extensions: 4496
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)