Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_O06
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 273 2e-74
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 156 3e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 153 4e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 129 4e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 4e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 1e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 5e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.012
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.27
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.61
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.61
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 3.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 273 bits (670), Expect = 2e-74
Identities = 125/137 (91%), Positives = 129/137 (94%)
Frame = +1
Query: 247 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 426
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 427 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 606
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 607 GVSHTVPIYEGYALPHA 657
GV+HTVPIYEGYALPHA
Sbjct: 158 GVTHTVPIYEGYALPHA 174
Score = 86.6 bits (205), Expect = 4e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 138 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 260
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/50 (78%), Positives = 42/50 (84%)
Frame = +2
Query: 650 PTPILRLDLAGRXLTDYLMXILTERGYSFTTTXXREIVRDIKXKLCYVAL 799
P I+RLDLAGR LTDYLM IL ERGY+F+TT REIVRDIK KLCYVAL
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 156 bits (379), Expect = 3e-39
Identities = 70/133 (52%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Frame = +1
Query: 262 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 438
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 439 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 618
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 619 TVPIYEGYALPHA 657
+VPIY+G+++P A
Sbjct: 167 SVPIYDGFSIPSA 179
Score = 52.4 bits (120), Expect = 8e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 156 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 257
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 650 PTPILRLDLAGRXLTDYLMXILTERGYSFTTTXXREIVRDIKXKLCYVA 796
P+ I + ++ GR +TDYL L + G+ ++ +EIVR+IK K CYVA
Sbjct: 177 PSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVA 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 153 bits (370), Expect = 4e-38
Identities = 65/124 (52%), Positives = 94/124 (75%)
Frame = +1
Query: 283 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 462
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 463 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 642
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 643 ALPH 654
L H
Sbjct: 170 VLNH 173
Score = 52.0 bits (119), Expect = 1e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 665 RLDLAGRXLTDYLMXILTERGYSFTTTXXREIVRDIKXKLCYVA 796
RLD+AGR T YL+ +L +GY+F T E VR++K KLCYV+
Sbjct: 177 RLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVS 220
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 144 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 248
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 129 bits (312), Expect = 4e-31
Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Frame = +1
Query: 286 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 462
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 463 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 618
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 619 TVPIYEGYAL 648
+P+ EGY +
Sbjct: 193 IIPVAEGYVI 202
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 156 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 239
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.4 bits (197), Expect = 4e-17
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +1
Query: 328 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 507
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 508 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 648
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 141 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 242
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 1e-16
Identities = 39/125 (31%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +1
Query: 274 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 450
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 451 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 624
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 625 PIYEG 639
P+ G
Sbjct: 181 PVLNG 185
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 156 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 251
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.9 bits (171), Expect = 5e-14
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +1
Query: 247 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 420
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 421 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 600
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 601 GDGVSHTVPIYEG 639
G + P+ +G
Sbjct: 157 GSDNASVTPVVDG 169
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 141 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 242
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +1
Query: 343 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 510
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 511 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 639
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 659 ILRLDLAGRXLTDYLMXILTERGYSFTTTXXREIVRDIKXKLCYVA 796
+ R+D+ G+ LT+YL +++ R Y+ IV +IK +CYV+
Sbjct: 183 VKRVDVGGKLLTNYLKEVISYRKYNMMEETY--IVNEIKESVCYVS 226
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 403 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 546
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 527 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 658
P T+P P T PV P S P+ P P PS++ P P
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTP 658
PP +P P P VPP S P A + P P P+ K P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 658
PP T+P P P VP + P P P PS++ TP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAP----PVPAPSSEAPSVSTP 1252
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 548 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 652
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 503 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 658
C+ ++ PP T S S P VPP S T + PT ST SP P
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 503 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 658
C+ ++ PP T S S P VPP S T + PT ST +P P
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLP 166
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 515 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 658
ST P T S S P VPP S T + PT ST SP P
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 279
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 548 PCSRCTRPVVPPVSCWTPATVSPTPCPST 634
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 545 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPILR 667
KP S+ TRP +P + T +V P P P + T I R
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIPPPSEQSLDTIIYR 104
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 524 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 631
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 445 LLTEAPLNPKANREKMTQIMFETFN 519
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 183 TYRSHCLLPTRQLLRRTS*ISEI 115
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +2
Query: 506 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPILRLDLAGR 685
S+H + +PS + P+ P ++ W P T PT P + + + P +
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQPASNANQVITPV 302
Query: 686 XLTDY 700
++DY
Sbjct: 303 SISDY 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,751
Number of Sequences: 5004
Number of extensions: 75132
Number of successful extensions: 268
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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