Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_O02
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 221 1e-58
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 216 4e-57
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 36 0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.61
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 29 0.80
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 221 bits (539), Expect = 1e-58
Identities = 103/156 (66%), Positives = 124/156 (79%)
Frame = +1
Query: 82 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 261
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 262 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 441
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 442 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAFP 549
P D Q I EAS+VNIPVIALC+TDS L VD+A P
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIP 165
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 216 bits (527), Expect = 4e-57
Identities = 99/160 (61%), Positives = 125/160 (78%)
Frame = +1
Query: 70 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 249
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 250 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 429
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 430 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAFP 549
+V DP D Q I EAS+VNIPVIALC+TDS L VDIA P
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIP 164
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 35.5 bits (78), Expect = 0.009
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 27/172 (15%)
Frame = +1
Query: 115 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 288
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 289 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 405
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 406 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAFP 549
++ P L+++L+P ++ EA ++P I + +TD+ V P
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIP 223
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 624 GGXPPXPPXGXXGGXXXXPPXPPXXXXXG 710
G PP PP G G PP PP G
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 624 GGXPPXPPXGXXGGXXXXPPXPP 692
GG PP PP G PP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 29.1 bits (62), Expect = 0.80
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 143 QKMLTSRWRPMSTNDVLMVPM*STCVVPGKNLFWL----LVLS*PSRTPLMCSSSPHGPS 310
+K++ S + VL V S +VPG L W+ L + +R +C+ SP G S
Sbjct: 270 KKLIPSLLHLDTDGRVLRVDSFSKLIVPGLRLGWITGNSLFIDRITRYAEVCTESPSGVS 329
Query: 311 VSVLY*SLPR 340
VLY L R
Sbjct: 330 QVVLYAILNR 339
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 205 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 468 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP*GDD 289
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 288 EHISGVLDG 262
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 620 PGXXPPGXPPGXXXGXXXXPPXPP 691
P PP PP G PP PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPP 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,188
Number of Sequences: 5004
Number of extensions: 60526
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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