Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_O01
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   6.3  
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    29   6.3  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 227 GGLGLTNVSMSQMQGQVDYDFGVGGRLPI 141
           GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 101 GGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = -1

Query: 447 PAXPXAXRXGCSRGKGXPKPXXXPKXXXXAKAPPXFPPRGRVSQXPPRFG 298
           P  P A      R +G PKP   PK        P  PP+ +    PP  G
Sbjct: 5   PPPPPAAATATYRRRGKPKPK--PKRKAAKPPSPSPPPKRQARDDPPHTG 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,841
Number of Sequences: 37544
Number of extensions: 287404
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)