Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_N21
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   226   2e-61
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   226   2e-61
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  226 bits (552), Expect = 2e-61
 Identities = 104/122 (85%), Positives = 113/122 (92%)
 Frame = +1

Query: 199 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 378
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 379 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 558
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 559 SG 564
           SG
Sbjct: 121 SG 122



 Score =  131 bits (317), Expect = 6e-33
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 563 GGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGV 742
           GGAAGATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGV
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGV 181

Query: 743 SVXGIIIYR 769
           SV GIIIYR
Sbjct: 182 SVQGIIIYR 190



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 226 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 405
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 406 LSFWRGNFANVIRYFPTQALNFAFKD 483
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 599 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 733
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 286 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 444
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  226 bits (552), Expect = 2e-61
 Identities = 104/122 (85%), Positives = 113/122 (92%)
 Frame = +1

Query: 199 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 378
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 379 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 558
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 559 SG 564
           SG
Sbjct: 121 SG 122



 Score =  131 bits (317), Expect = 6e-33
 Identities = 59/69 (85%), Positives = 65/69 (94%)
 Frame = +2

Query: 563 GGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGV 742
           GGAAGATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGV
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGV 181

Query: 743 SVXGIIIYR 769
           SV GIIIYR
Sbjct: 182 SVQGIIIYR 190



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 226 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 405
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 406 LSFWRGNFANVIRYFPTQALNFAFKD 483
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 599 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 733
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 286 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 444
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 588 REVAPAAPPGGQITSEVTPELR 523
           ++++PA P G + +   TPE++
Sbjct: 272 KKLSPATPKGSKCSMITTPEIK 293


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 636 SAARRVRAKSRGYTKHREVAPAAPPGGQITSEVTP 532
           S  R + A       H ++  + P GG + + VTP
Sbjct: 128 SHVRALAAGGNHLPFHEKLVESFPRGGSLPTPVTP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,853
Number of Sequences: 438
Number of extensions: 4572
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)