Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_N19
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.56 
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    29   0.74 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   4.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   6.9  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   6.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.9  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   6.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   6.9  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +1

Query: 169 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 321
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 579 LSILPVSGPGEISRVGSN*AAGSTPGGALPSIPLSFSFATIL 454
           +SIL V+GP +  R+G +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -1

Query: 593 KELLICQSFRCPGLVRFPVLGQIKPQAPXXXXXXXXXXXVSALQPYSPRSPKSLVSRKLP 414
           +EL     F  PG  +F +  +I  +AP              LQPY  R  K  V + LP
Sbjct: 545 RELAALVDFLMPG--KFEIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLP 602

Query: 413 AE 408
           ++
Sbjct: 603 SK 604


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 288 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 455
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 456 VWLQS*NLKELTEEHHQEW 512
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 650 RQIAPPXKNGPCTTTHRIKKELLICQSFRCPGLV 549
           RQ+ PP  + P T ++    +L + +S+R  G+V
Sbjct: 137 RQLFPPTPSTPSTPSYNSTAKLSLRKSYRSAGVV 170


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 214 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 321
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 624 RAMHHHPPNQERAVNLSILPVSGPGEISRVGSN*AAGSTPGGALPSIPLSFSFAT 460
           R + HH P+QE +  LS    S P   S +  + +  S+P G  PS+  S    T
Sbjct: 129 RTLLHHLPSQEISTLLSSSLTSSPSN-SGLSLDKSLPSSPKGDSPSLSSSLPSLT 182


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 614 TTTHRIKKELLICQSFRCPGLVRFPVLGQIKP 519
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 513 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 415
           ST   ALP  PLSFS     P ++     PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,145
Number of Sequences: 5004
Number of extensions: 62727
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)