Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_N09
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 0.001
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.3
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.1
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 7.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.4
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 35 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 214
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 215 GSALSPLLFSLYINDI 262
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 386 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 502
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +3
Query: 150 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSLPMTPPSTTRV 326
++D+ RVP P S + K+PPS I + P L+ P RS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 327 GRRRCFIDDFRPQLPP 374
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 616 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 512
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.4
Identities = 31/99 (31%), Positives = 42/99 (42%)
Frame = +3
Query: 396 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI* 575
G++ P K R S+ G R AS R A + PPP S +SP P + +
Sbjct: 939 GSNMRLPTKLTRPSNDG------RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDH-- 990
Query: 576 ASPSTVG*HSAPTSRRYAXVPAFILGRLYPMICRRSKCP 692
P SAP S+ + PA L R+ P+ SK P
Sbjct: 991 --PP-----SAPLSKPVSTSPAAPLARVPPVPKLSSKAP 1022
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 263 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 433
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 434 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 523
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 203 GVPQGSALSPLLFSLYINDI 262
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 568 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 473
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 396 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 515
GAS+ P R SS P AS++ +I PPP
Sbjct: 889 GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,272
Number of Sequences: 5004
Number of extensions: 78030
Number of successful extensions: 275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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