Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_N08
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 31 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.7
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
07_01_0479 + 3606663-3607448 29 3.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 3.6
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.3
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.3
07_03_1136 + 24218601-24218734,24218769-24219906 28 8.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.3
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.3
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 684 PAXPGXPXTPXXXPPXGGAXXFXPXGGPXXXGSPXXGXXPXRXPPXXGG 830
P G P +P P GG P P G P P PP GG
Sbjct: 30 PLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPSGYPPSQGG 78
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +1
Query: 634 PPPXPGXGXXXLRXLGPXXXXAXPGPPRXXPXXGAXXXSXPXXGPXXXAPPRXAXPPXG 810
PPP P GP GPP P G P G PP PP G
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP--PPPPKG 384
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 220 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 131
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +1
Query: 625 PGVPPPXPGXGXXXLRXLGPXXXXAXPGPPRXXPXXGAXXXSXPXXGPXXXAPPRXAXPP 804
PG PPP PG +GP PG P P P P PP P
Sbjct: 198 PGGPPPPPGPFMRGPPPMGP--PQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQP 255
Query: 805 XGXP 816
P
Sbjct: 256 GQNP 259
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +1
Query: 625 PGVPPPXPGXGXXXLRXLGPXXXXAXP-GPPRXXPXXGAXXXSXPXXGPXXXAPP-RXAX 798
PGVPP PG GP P GPP+ P G P P PP R
Sbjct: 191 PGVPPAFPGGPPP---PPGPFMRGPPPMGPPQVRP--GMPGGPPPGMRPGMPPPPFRPGM 245
Query: 799 PP 804
PP
Sbjct: 246 PP 247
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 392 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 243
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Frame = +1
Query: 616 GXXPGVPPPXPGXGXXXLRXL---GPXXXXAXPGPPRXXPXXGAXXXSXPXXGPXXXAPP 786
G G PPP P P A GPP P P GP PP
Sbjct: 315 GAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374
Query: 787 RXAXPPXGXP 816
A G P
Sbjct: 375 GAAGRGGGGP 384
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Frame = +1
Query: 637 PPXPGXGXXXLRXLGPXXXXAXPGPPRXXP---XXGAXXXSXPXXGPXXXAPPRXAXPPX 807
PP G G P A P PP P GA P P A PR P
Sbjct: 309 PPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGP 368
Query: 808 GXP 816
G P
Sbjct: 369 GPP 371
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 625 PGVPPPXPGXGXXXLRXLGPXXXXAXPGPPRXXPXXGAXXXSXPXXGPXXXAPPRXAXPP 804
P PPP P L P A P PP P P P PP PP
Sbjct: 1143 PEGPPPLPSDSPPCQPPLPPSPPPATPPPP---PPLSPSLPPPPPPPPLPSGPPPQPAPP 1199
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 205 VRVHRADTGRSSNELDRQTTELERRG 282
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +1
Query: 628 GVPPPXPGXGXXXLRXLGPXXXXAXPGPPRXXPXXGAXXXS--XPXXGPXXXAPPRXAXP 801
G PPP P R GP A P PP P + S P P A P
Sbjct: 688 GPPPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNP 747
Query: 802 PXGXP 816
P P
Sbjct: 748 PAPPP 752
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = -3
Query: 803 GGXAXRGGAXXXGPXXGXEXXXAPXXGXXRGGPGXAXXXXGPXXLXXXXPXPGXGGGTPG 624
GG A G G P G GGPG A G P G GGG G
Sbjct: 150 GGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLG 209
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 92 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 247
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 381 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 241
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 329 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 243
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 390 GRGERSPRRWLQPRLAVPRQASTSVPRTP 304
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,165,326
Number of Sequences: 37544
Number of extensions: 468033
Number of successful extensions: 1510
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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