Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_N02
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    31   0.20 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.79 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.4  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   3.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.4  

>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 226 HPSYLAYSLT-IFPGSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRI 402
           HPS  A  LT I P S      LF D   +   + NKS +  +L      LG      RI
Sbjct: 261 HPSINALLLTPICPNSLSFRPVLFPDTFKISIETSNKSRVRPQLSIDGRPLGLTDIGQRI 320

Query: 403 DINPAKSTAV 432
           DI   K  A+
Sbjct: 321 DITSVKDNAI 330


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 247 SLTIFPGSPPTHLALFADDTTVYYSSR-NKSLIAKKLQSAALALGQW 384
           S+  FPG    H A   DDT   Y  R NK LI  +L +   +  +W
Sbjct: 290 SIGRFPGPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRW 336


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 238 LAYSLTIFPGSPPTHLALFADDTTVYYSS 324
           L+Y L +FP S P    L AD   +YY S
Sbjct: 176 LSYGLILFPISDPLFKNLGADGLAIYYVS 204



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 333 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLH 455
           +P REE S + P  +  V      + PS+K  G +S  K++
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIY 145


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 206 DSSCERSWGGAGSLDSISKRAVRQEVPYDEXRDYPGTPMLNSLKIKPLCQTLSNAFATSK 27
           DSS + S G + SLDS++K+ + +     +       P LNS    P+  +L     + K
Sbjct: 244 DSSNKLSNGRSSSLDSLAKKRMSKSKSTPQISKKFSVP-LNSASKSPIGSSLFKTSDSRK 302

Query: 26  KRAP 15
           K  P
Sbjct: 303 KSVP 306


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 367 GLRSEASSRLGTCFYWNSKQSCRRRIKLNGSAATRGI-SLTNKLNRRGE 224
           GL+S    +  TCFY N K   + +I+   S  T  I   TN ++ +G+
Sbjct: 17  GLKSTFGDKTVTCFYCNKK---KEKIRDGTSTWTCSICEATNHIDEKGD 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,290
Number of Sequences: 5004
Number of extensions: 63580
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)