Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_N02
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     30   1.9  
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504...    29   3.4  
06_01_0199 + 1538124-1538485,1538997-1539076,1539198-1539357,153...    29   4.4  
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236...    28   7.8  
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107...    28   7.8  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   7.8  

>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 470 VLGGGISHPRLLSLVNPYPGARKVKYLGVT 559
           +LG GI+   +LS+V+P PGA++   LG T
Sbjct: 253 ILGHGITSADVLSVVDPPPGAKRRLRLGYT 282


>06_03_0921 +
           25949453-25949986,25950150-25950188,25950380-25950445,
           25950526-25950669,25951416-25951612,25952281-25952443,
           25952760-25952873,25953304-25953401,25953964-25954042,
           25954356-25954514,25954690-25954779,25955790-25955923,
           25956513-25956672,25956826-25956909,25957000-25957167,
           25957321-25957446,25958088-25958225,25958311-25958414,
           25958832-25958895,25959229-25959317,25959393-25959534,
           25959937-25960000,25960085-25960152,25960399-25960521,
           25960604-25960669,25960857-25960962,25961076-25961167,
           25961243-25961344
          Length = 1170

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
 Frame = +1

Query: 46  FDKVWHNGLIFKLF-NMGV----PG*SRCSSYGTSCRTALFDIESR-EPAPPHDLSQLES 207
           F ++W   L++K F N+       G      Y T C+TAL + E+  +     D + + S
Sbjct: 164 FSQLWEKDLVYKGFKNLEFICVENGIVLVMPYSTGCKTALSNFEAALDYRTVPDPAIMVS 223

Query: 208 RKALSSHPSYLAYSLTIFPGSPPTHLALFADDTTVYYSSRNKS 336
              +    +    + T  P + P++LAL  +   VY   ++KS
Sbjct: 224 FPIIGDADNAALVAWTTTPWTLPSNLALCVNANLVYVKVKDKS 266


>06_01_0199 +
           1538124-1538485,1538997-1539076,1539198-1539357,
           1539497-1539578,1540080-1540167,1540256-1540302,
           1540623-1540865
          Length = 353

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 230 G*EDRALRDSSCERSWGGAGSLDSISKRAVRQEVPYDEXRDYPGTPMLNSLKIKPLCQTL 51
           G E R +  SS   SW              R+++PYD  R Y  + + N L  + L   L
Sbjct: 168 GVEGRIVNVSSTIHSWFAGDDAVGYIDAVTRRKIPYDPTRAYALSKLANVLHTRALADRL 227


>11_06_0022 +
           19321886-19321918,19323059-19323131,19323587-19323680,
           19324383-19324499,19324584-19324641,19324713-19325114
          Length = 258

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 301 RRRIKLNGSAATRGISLTNKLNRRGERTEPCGTPAVRGRGEERVPSTR 158
           RR+   NGS      S ++K+  R     P G    RGRG  R P+ R
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152


>11_01_0129 -
           1073002-1073073,1073463-1073585,1073667-1073732,
           1074227-1074347,1074536-1074603,1074792-1074863,
           1076045-1076222,1077554-1077888
          Length = 344

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 221 PLTPPI*LIR*RYSPGRRRPI*LY 292
           P  PP+  +R R+  GRRRP+ +Y
Sbjct: 39  PALPPVDALRRRFRRGRRRPVRVY 62


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 316 YSSRNKSLIAKKLQSAALALGQWFRKWR 399
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,458,959
Number of Sequences: 37544
Number of extensions: 504675
Number of successful extensions: 1369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)