Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_N02
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    36   0.035
S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        29   4.0  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        29   4.0  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    29   4.0  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    29   4.0  
AC006642-2|AAF39831.1|  617|Caenorhabditis elegans Acyltransfera...    28   9.2  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = +3

Query: 123 IRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRV 269
           + +FLSNRSFR R+  T SS +  T GVPQG            NDI  +
Sbjct: 50  VNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSI 98



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 292 FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 432
           FADDT +Y +S  K+     LQSA  A+  W +  ++ +N +K+  V
Sbjct: 108 FADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHV 153


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 259 ISLTNKLNRRGERTEPCGTPAVRGRGEER 173
           ISLTN     GERT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 RGCEIPPPNTGGXPC 454
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 RGCEIPPPNTGGXPC 454
           R C +PPP  GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 RGCEIPPPNTGGXPC 454
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 RGCEIPPPNTGGXPC 454
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>AC006642-2|AAF39831.1|  617|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform a protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 403 LCAIFGTTVLGLGLRSEASSRLGTCFYWNSKQ-SCRRRIKLNGSAATRGISLTNKLNRRG 227
           LC I  T    LGLR      L   F W ++Q     +I+   SA T    L NKL+   
Sbjct: 25  LCIILATFGKSLGLRQMYVDTLINIFEWGARQIKTTEKIRRKESALTAPFFL-NKLSEEA 83

Query: 226 ERTE 215
           +  E
Sbjct: 84  DDDE 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,844
Number of Sequences: 27780
Number of extensions: 396425
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)