Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_M23
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.48 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   7.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   7.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 751 DNNRNDGANNGPFEPGRGTGA 813
           +NN N+  NNG  + G G GA
Sbjct: 243 NNNNNNNNNNGANDNGNGNGA 263


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 663 IPRMSLIGRTQLGPLRLPVCSLPP 592
           IPR SL+  T +  LRL     PP
Sbjct: 739 IPRASLVSTTSVKSLRLEGDETPP 762


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 446 RRCRPDAASSARLPPRWTG---ARCRSGSSLSPSQPFRQL 336
           RR RP  AS+ ++         A C SGSSL+ S+  R L
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 482 EALMSSKLFREELERVLDQQMHEGGD 559
           E L  +K+ +EE+  +LD+ +    D
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSD 463


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 482 EALMSSKLFREELERVLDQQMHEGGD 559
           E L  +K+ +EE+  +LD+ +    D
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSD 169


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 16/66 (24%), Positives = 24/66 (36%)
 Frame = +3

Query: 531 STSRCTRAATLRSCRGSRRWSAGDCTPEASGVLAAFCRSTTSEVSKVSGYEXGEKNTPLQ 710
           +  RC       S  GS  WSA     + +        S   + + V G+E    N  ++
Sbjct: 360 AVKRCNATGAF-SWIGSDGWSARGLVSDGNEAEVEGTLSVQPQANPVKGFEEYFLNLTVE 418

Query: 711 AGRRVP 728
             RR P
Sbjct: 419 NNRRNP 424


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 388 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPR 513
           AP    GRR    A    R  CP+    E R+   VL  + R
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 388 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPR 513
           AP    GRR    A    R  CP+    E R+   VL  + R
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,957
Number of Sequences: 438
Number of extensions: 5408
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)