Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_M12
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 236 1e-62
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 233 1e-61
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.0
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 29 6.0
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 7.9
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 236 bits (578), Expect = 1e-62
Identities = 112/195 (57%), Positives = 139/195 (71%), Gaps = 1/195 (0%)
Frame = +3
Query: 72 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 251
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 252 KXXXXXXXXXXXENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 431
K ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 432 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 611
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 612 LLAREVLXLRG-VLP 653
LLAR VL +RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 233 bits (570), Expect = 1e-61
Identities = 109/184 (59%), Positives = 133/184 (72%), Gaps = 1/184 (0%)
Frame = +3
Query: 105 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXXXXXXXXX 284
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 285 XENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 464
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 465 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG 644
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL +RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 645 -VLP 653
+LP
Sbjct: 192 TILP 195
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 172 TFSAPRWVVAASILVTSSSLRASTSNP 92
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 350 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 457
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -2
Query: 667 SAGSWGSTPRSXSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYE 494
SAGS GSTP S +T R + + + G+ +S L +KA G L E
Sbjct: 12 SAGSSGSTPSSPATGRGGSDSSDANQPSPVKERGVVLSELLGHIHGYYKAALGRLPVE 69
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 24 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 194
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 354 QTSVQHADRRAVMR*RTHQRGSRGLRQHEQPEQVFPRYDAS*SHGYHQHVVC 199
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,413,511
Number of Sequences: 37544
Number of extensions: 562896
Number of successful extensions: 1428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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