Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_M08
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.66
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 31 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.0
12_02_0299 - 17051570-17052474,17053542-17053755 29 3.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 3.5
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 4.7
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 4.7
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.2
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 319 GWXPPPXFXXXXXXPXXPPPGGXXGXPP 236
G PPP P PPPGG G PP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPP 1123
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -2
Query: 318 GGXPPPXFXXXXXPPXXPPR--GXXXGPP 238
GG PPP PP PPR G GPP
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Frame = -3
Query: 674 PXXRXGGKXXPXAXPPXEARRAXXXXAPXKRGRXGGXXPXPXXGXGXXXG-----XXXPX 510
P R GG+ P + PP + R +RG GG P P G G G
Sbjct: 50 PWSRGGGRAAPESTPPAKYARGRR----PRRG-SGGHAPHPESGGGGGGGGGAREWRDVG 104
Query: 509 TXXXXGGGRGAXPXPXGXXAXXRXXXGXXGPRRP 408
T GGGRG R GP P
Sbjct: 105 TTMRGGGGRGRGKSAQAADRCCRRMPMDGGPPTP 138
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 310 PPPXFXXXXXXPXXPPPGGXXGXPP 236
PPP P PPPGG G PP
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNP 208
PPP PP PP+G PP K P P
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 318 GGXPPPXFXXXXXPPXXPPRGXXXGPP 238
G PPP PP PP G GPP
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +1
Query: 415 RGPXXPXXXRXXAXXPXGXGXAPLPPPXXXXVXGXXXPXXXPXPXXGXGXXPPXRP 582
+GP P + P G +P PPP G P P G PP P
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPP----PGGKKGGPPPPPPKGGASRPPAAP 393
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -1
Query: 316 WXPPPXFXXXXXXPXXPPPGGXXGXPPKILXXFPK 212
W PPP F P PP PP FP+
Sbjct: 269 WAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQ 303
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/68 (32%), Positives = 22/68 (32%)
Frame = +2
Query: 515 GXXXPPXXXXXAPXXGPXPPXALVSXGXGGXXPGGPRXGXXXXAXASPXXAXPGPPGXXX 694
G PP AP P PP S G P P A P PGPP
Sbjct: 319 GAPPPPPAHPAAP--APPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPG-PGPPPPPG 375
Query: 695 AARXGXXG 718
AA G G
Sbjct: 376 AAGRGGGG 383
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Frame = +2
Query: 527 PPXXXXXAPXXGPXPPXALVSXGXGG----XXPGGPRXGXXXXAXASPXXA 667
P P GP PP G GG PGGPR SP A
Sbjct: 358 PAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKKSPGAA 408
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNPGS 202
PPP PP PP G GPP P PGS
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGPP----PPPPRPGS 645
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -2
Query: 678 GPGXAXXGEAXAXXXXPXRGPPGXXPPXPXETRAXGGXGP 559
GP G+ P P PP P + A GG GP
Sbjct: 42 GPPGGGGGDRRGGFQLPPDAAPPPPPPPPPSSAAAGGGGP 81
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/74 (31%), Positives = 23/74 (31%)
Frame = -3
Query: 680 GGPXXRXGGKXXPXAXPPXEARRAXXXXAPXKRGRXGGXXPXPXXGXGXXXGXXXPXTXX 501
G P GG A PP P G GG P G G G P
Sbjct: 96 GAPGPLGGG----GARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG---GGGAPRRVL 148
Query: 500 XXGGGRGAXPXPXG 459
GGG GA P G
Sbjct: 149 GGGGGGGALARPPG 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,675
Number of Sequences: 37544
Number of extensions: 502686
Number of successful extensions: 1445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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