Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_M08
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.45
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.45
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.4
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 1.8
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 29 4.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.5
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 9.6
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 9.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 9.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 9.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 9.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +1
Query: 421 PXXPXXXRXXAXXPXGXGXAPLPPPXXXXVXGXXXPXXXPX-PXXGXGXXPPXRP 582
P P P G G P PPP G P P P G G PP P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPP 238
PPP PP PP G GPP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +1
Query: 421 PXXPXXXRXXAXXPXGXGXAPLPPPXXXXVXGXXXPXXXPX-PXXGXGXXPPXRP 582
P P P G G P PPP G P P P G G PP P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPP 238
PPP PP PP G GPP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPP 321
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -1
Query: 421 GXXAPPXXXGGXXXXXXXXXXXXXXXXXXKKRGXGWXPPPXFXXXXXXPXXPPPGGXXGX 242
G PP GG G PPP P PPPGG G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 241 PP 236
PP
Sbjct: 784 PP 785
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNPGSGVXXEF 184
PPP PP PP G GPP P P + V ++
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -1
Query: 421 GXXAPPXXXGGXXXXXXXXXXXXXXXXXXKKRGXGWXPPPXFXXXXXXPXXPPPGGXXGX 242
G PP GG G PPP P PPPGG G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 241 PP 236
PP
Sbjct: 784 PP 785
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNPGSGVXXEF 184
PPP PP PP G GPP P P + V ++
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -1
Query: 421 GXXAPPXXXGGXXXXXXXXXXXXXXXXXXKKRGXGWXPPPXFXXXXXXPXXPPPGGXXGX 242
G PP GG G PPP P PPPGG G
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 241 PP 236
PP
Sbjct: 367 PP 368
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 309 PPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNPGSGVXXEF 184
PPP PP PP G GPP P P + V ++
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 386
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = -3
Query: 332 KKGXXVGXPPPFFXXXIXPXX---PPPGGXXXX--PPXNFXHXPKTRGPGXXXNFGIRGG 168
++G G PPP F P PPP G PP +F G +F RGG
Sbjct: 748 QQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGG 807
Query: 167 DSPIVRCE 144
P R E
Sbjct: 808 GGPPFRPE 815
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/72 (30%), Positives = 22/72 (30%)
Frame = +3
Query: 465 GXGAXPPPXPXXXXCXWXXXPXXXPXXXXRXXXXXXXXXSFRGGXXXGXPAGLXGGXXXX 644
G G PPP P C P P R SF GG G PA G
Sbjct: 26 GCGCAPPPPPPPCGC---GGPSLPPLQLPRFELPRLSLPSF-GGGGCGGPAPCGGAAPAY 81
Query: 645 XXLPPXPLXRAP 680
PP AP
Sbjct: 82 VAPPPAAGYAAP 93
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 681 GGPGXAXXGEAXAXXXXPXRGPPGXXPPXP 592
GGPG G A P RGPP PP P
Sbjct: 5 GGPGGPMYGGAGGGGGGPPRGPP-QQPPQP 33
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = -2
Query: 681 GGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXETRAXGGXGPXXGAXXXXXGGXXXP 514
GGP P GPPG P P A G G G GG P
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAP 420
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +2
Query: 140 APRNVRSGSPPPEXQNSXXTPDPGFWEXG*NFXG-GPXXXPRGGXXGGXXXXXKXGGGXP 316
+P R+GSPPP S P G P PRG G + GG P
Sbjct: 263 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322
Query: 317 P 319
P
Sbjct: 323 P 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +2
Query: 140 APRNVRSGSPPPEXQNSXXTPDPGFWEXG*NFXG-GPXXXPRGGXXGGXXXXXKXGGGXP 316
+P R+GSPPP S P G P PRG G + GG P
Sbjct: 284 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343
Query: 317 P 319
P
Sbjct: 344 P 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +2
Query: 140 APRNVRSGSPPPEXQNSXXTPDPGFWEXG*NFXG-GPXXXPRGGXXGGXXXXXKXGGGXP 316
+P R+GSPPP S P G P PRG G + GG P
Sbjct: 269 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328
Query: 317 P 319
P
Sbjct: 329 P 329
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 696 AXXXPGGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXE-TRAXGGXGP 559
A PGGPG E GPPG P + GG GP
Sbjct: 199 APGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 696 AXXXPGGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXE-TRAXGGXGP 559
A PGGPG E GPPG P + GG GP
Sbjct: 199 APGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 696 AXXXPGGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXE-TRAXGGXGP 559
A PGGPG E GPPG P + GG GP
Sbjct: 199 APGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 696 AXXXPGGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXE-TRAXGGXGP 559
A PGGPG E GPPG P + GG GP
Sbjct: 199 APGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -2
Query: 315 GXPPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNPGSGVXXEFWXSG 172
G PP F P PP G GPP F P P G F SG
Sbjct: 284 GGPPGPFD----PSGAPPSG---GPPGPFDPSGAQPSGGPPGPFNPSG 324
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = -2
Query: 735 GXXXXXPXXPXRAAXXXPGGPGXAXXGEAXAXXXXPXRGPPGXXPPXPXETRAXGGXGP 559
G P P + A G P A G +GPP PP P G GP
Sbjct: 94 GPPRGYPPPPPQGADTWRGAPPPAHHGH-FGPPGHHFQGPPQHFPPGPPRPHFPGPPGP 151
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 318 GGXPPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNP 208
G PPP P PP G GPP + P Q P
Sbjct: 679 GPPPPPQGQQYYGGP--PPPGQPYGPPGGYPPQQQRP 713
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 318 GGXPPPXFXXXXXPPXXPPRGXXXGPPXKFXPXSQNP 208
G PPP P PP G GPP + P Q P
Sbjct: 679 GPPPPPQGQQYYGGP--PPPGQPYGPPGGYPPQQQRP 713
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 551 PXXGPXPPXALVSXGXGGXXPGGPRXGXXXXAXASPXXAXPGPPG 685
P P PP + G G PG P G A + P PGPPG
Sbjct: 179 PAGPPGPPGPDGNAGPAGA-PGVP--GPDGDAGSPPPPGPPGPPG 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,166
Number of Sequences: 27780
Number of extensions: 340184
Number of successful extensions: 1194
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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