Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_M06
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.5  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    27   4.4  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 RVGSKRASCYKSDGKPQRCIPEFENAAYLVQ 230
           +VG KR  C+++ G    C  EFEN  Y ++
Sbjct: 449 QVGYKRL-CFRTKGNGPMCFVEFENIPYAME 478


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 266 YSVVSAGVGRLHLDQISGVLELWYASLRFSIGFITRGSFRAD 141
           +S +  G+G   LDQ +G+LE WY  + F+I  +   SF  D
Sbjct: 217 FSSLHPGLG--FLDQYTGILERWY--VLFNITMLRLVSFNMD 254


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +3

Query: 402 TMKEGIQYPNQVNLTLHLGKAY----DITYVRIVFYSPRPQSFAIYKKTNEDXVWEPF 563
           T+ +    P+QV L  HL K+Y     IT + ++   P      + K    D VW  F
Sbjct: 241 TLSDDSHGPHQVGLNYHLAKSYLDKCGITSLCMIEKGPDGNG-TVVKNVTVDNVWSKF 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,211
Number of Sequences: 5004
Number of extensions: 68875
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)