Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_M06
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    31   1.5  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    29   4.6  
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    29   4.6  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   6.1  
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           29   6.1  

>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 7/219 (3%)
 Frame = +3

Query: 126 YQTPRVGSKRASCYKSDGKPQRCI--PEF--ENAAYLVQMEATNTCGDNGVKLYCIQTSA 293
           Y +P+ G   A+C +        +  PEF  +N  Y    +    C D+GV +  +Q   
Sbjct: 220 YVSPK-GQSFATCQEVSAYLMSLLGYPEFKTDNIEY-GSTQQHGLCADDGVNVLGVQHQI 277

Query: 294 GTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGI-QYP-NQVNLTLHLGKAY 467
           GTS  S     P   +++Y     H +D     Q ET+ + I  Y   Q NLT H   AY
Sbjct: 278 GTSMDSQSNL-PVASATFY----SHSRD-----QDETVADDINSYECQQCNLTFHGQSAY 327

Query: 468 DITYVRIVFYSPRPQSFAIYKKTNEDXVWEPFQYFSASCRETYGVEEQKSAELGAETXAL 647
               +     S + +      K  E  + +  ++    C +T+  + +    +G+     
Sbjct: 328 AHHLITFHKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHIGSHAKYQ 387

Query: 648 CTSEYSDISPLSGXNVPXSTLXGXPSA-XTFXSSPELKD 761
             +  + +   SG  V  ++  G  S+      SP+L +
Sbjct: 388 GLTPEAFLQTFSG-KVGNNSFAGLSSSLQVLVGSPQLNE 425


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 375 DNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDI 473
           + Q +W  E++K   Q PN+ NLT   G  +D+
Sbjct: 107 EEQCYWIRESLKTFPQPPNRTNLTALYGPIFDL 139


>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 29  NRRRLHALRQNGAAAHLHIFAQYLERSRGSELLPNAEGR--L*TSLLL*IRWKTSKMHTR 202
           NRR+  A   +GAAA     +   +R RG +  P   G      SLL  +R + S  H R
Sbjct: 25  NRRKHQASSSSGAAASASPPSPPAKRQRGDDAAPKGRGSKPKPASLLDKMRARLSGGHFR 84

Query: 203 VRERRLFGPDGGD 241
           +   +L+   G D
Sbjct: 85  MLNEKLYTCSGQD 97


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 471 YHTLCPNVRSNSLDWGTGCLPSLSPT-ATKSGCPARGEGRLS 349
           + TL P VRS+S+    G   ++ P+ AT  GCP R  G LS
Sbjct: 17  WFTLNPTVRSSSVPGNQGINSTILPSAATLEGCP-RSCGNLS 57


>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 465 YDITYVRIVFYSPRPQSFAIYKKTN-----EDXVWEPFQYFSASCR 587
           Y I   +++F  PRPQS       N     +  + EPF + S SC+
Sbjct: 84  YTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHFCSLSCK 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,832,501
Number of Sequences: 37544
Number of extensions: 487577
Number of successful extensions: 1196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)