Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_M02
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.46
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.46
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.60
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 5.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 5.6
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.46
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +3
Query: 606 PAXXXXXXPXXXSRPPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPPXXP 767
P+ P RPPT AP PPP P P PPP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +3
Query: 582 PPRRPXXXPAXXXXXXPXXXSRPPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPP 758
PP P P P S PP P +PP P P PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP----SAPSLPSAVPPMPPKVPPP 204
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.46
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 227 VRVHRADTGRSSNELDRQTTELERR 301
+R H+ GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 642 SRPPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPPXXP 767
SRPP P P PPP P T + P P P P
Sbjct: 239 SRPPERVPSLSAPAPPP---IPPPSNGTVSSPPNSPPRPIAP 277
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 638 AIPPPDXXAPLXPPNPPXXPAXRAXPRXDPXRXXXXPPPPXXP 766
A PP AP+ PP P PA P P P P P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/63 (28%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Frame = +2
Query: 584 PPXPXXXXGXXXXXXSXXAIPPPDXX--APLXPPNPPXXPAXRAXPRXDPXRXXXXPPPP 757
PP P S PP AP PP PP P P P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 758 XXP 766
P
Sbjct: 475 APP 477
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 674 PPNPPXXPAXRAXPRXDPXRXXXXPPPP 757
PP PP A + P R PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +2
Query: 584 PPXPXXXXGXXXXXXSXXAIPPPDXXAPLXPPNPPXXPAXRAXPRXDP 727
P P S PP P PP PP PA P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 648 PPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPP 758
PP P PTP P P G P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 651 PTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPPXXP 767
PT AP PP GP G PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 647 PPDXXAPLXPPNPPXXPAXRAXPRXDPXRXXXXPPPP 757
PP AP PP P P + P P PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPM-PAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +3
Query: 582 PPRRPXXXPAXXXXXXPXXXSRPPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPPX 761
PP P P+ P PP AP P P P P + A P P
Sbjct: 1063 PP--PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA 1120
Query: 762 XPXQXXGXAA 791
P AA
Sbjct: 1121 PPVPKPSVAA 1130
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +3
Query: 594 PXXXPAXXXXXXPXXXSRPPTXAPXXXXPTPPPXRRXGPXXGXTXAGXPXXXPPPXXP 767
P P+ P PP P P P P AG P PP P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +2
Query: 578 GXPPXPXXXXGXXXXXXSXXAIPPPDXXAPLXPPNPPXXPAXRAXPRXDPXRXXXXPPPP 757
G PP P IPP A PP PP P+ A P P PPP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP--PS-EAPPVPKPSVGVPPVPPP 1213
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 296 VPTQSFVDPIHLKICQYPHGGL 231
+P Q+F H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 753 GGGXXXXRXGSXRGXARXAGXXGGLGGXXGAXXSGGGXAXXXXXXXXXPXXXXGXGGXP 577
GGG GS G G GG GG G GG G GG P
Sbjct: 187 GGGFGGFGGGSG-GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -1
Query: 731 GXGXXXXXPXP-PXGXGGWXGXXGRXCRGAGXXGGXXXXXXXRXRRGAXGGXP 576
G G P P P G GG+ G G G G G GG P
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 747 GXXXXRXGSXRGXARXAGXXGGLGGXXGAXXSGG 646
G R GS G G GG GG G GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,318
Number of Sequences: 5004
Number of extensions: 38387
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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