Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_M02
(821 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 6.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 99 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 263
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 264 MNWIDKRLSWNA 299
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 126 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 290
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 291 WN 296
WN
Sbjct: 118 WN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 126 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 290
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 291 WN 296
WN
Sbjct: 118 WN 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 216 NIRESESTVRILADLQMNWIDKRLSWN 296
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.6
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 105 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 272
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 273 IDKRLSW 293
D RL++
Sbjct: 68 TDPRLAF 74
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 650 PDXXAPLXPPNPPXXPAXRAXPRXDPXRXXXXPPPPXXP 766
P AP P+P P +A R P PPP P
Sbjct: 16 PSSGAPGPQPSPHQSP--QAPQRGSPPNPSQGPPPGGPP 52
Score = 21.8 bits (44), Expect = 7.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 646 APRXXRPXXPXQPPXPXGGXG 708
AP+ P P Q P P G G
Sbjct: 33 APQRGSPPNPSQGPPPGGPPG 53
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 122 GQ*CCVFAFCRTSYSTSEEKXVTRII 45
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.0
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 105 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 272
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 273 IDKRLSW 293
D RL++
Sbjct: 68 TDPRLAF 74
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,880
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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