Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_L20
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   1.8  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.8  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    25   9.8  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 224 HANIRESESTVRIQADLQLDELDRQTTELERRGVGLQH 337
           H N R +   +R+   LQLD  D++  +L  +G+ + H
Sbjct: 69  HLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRMVH 106


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 423 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMH 557
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIH 629


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 641 PXPVTSHXXDLEHTVYSFVNHEIH-FVTXV-HPRTELERAS 525
           P P+ SH  D +H  YS+ N  ++ F   + HP   L  AS
Sbjct: 595 PPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDAS 635


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 507 WPNDMQTCTFKFGSRMHXSDEMDFVIDKRIYSM 605
           WP D+ T    FG+     D  D + D+ +Y M
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLM 137


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 244 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 137
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 374 VRPPQAFRGHQPSAAAPLPCVPTQSFVDPIHPVEDLPVFARWTRTH 237
           VRP Q + G+  SA      +P + F   +  +  LP  A W R H
Sbjct: 249 VRPAQIWAGYMSSAGRVGSMLPVEVFSMSVRLIVKLPSTAVW-RDH 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,011
Number of Sequences: 5004
Number of extensions: 53507
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)