Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_L16
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    27   2.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   3.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.8  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   5.8  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   7.6  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 352 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYFVNLEAVVFPSAPSLKIPVTVDLCWTTA 522
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 523 DVTVEGVNVLATPSSS 570
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
 Frame = +1

Query: 352 TGTETKSNSVTVQSLPNVSSIIKGYRDAYFVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 531
           T T   S  +T  +    +S+   Y      +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 532 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 672
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +1

Query: 364 TKSNSVTVQSLPNVSSIIKG--YRDAYFVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 537
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 538 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 672
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 162 RESIDPRREWPKRQKRXKGTISSMNRSSRNPVAKHPLQKDRKRGGRNECEL 10
           ++ +DP R++  R+KR K    S +RS ++   +H     R    R   +L
Sbjct: 165 KDLLDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRSRRHRDL 215


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 599 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 480
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 611 PSPAISATSTRSSN---PRFHTPTTPD 682
           P P+IS T+T SS       H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 717 YGVQGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNA 571
           YG++G ++  ++SG+ G   +   D+   A   G    MH+G   NSN+
Sbjct: 131 YGIEGAVKAVIESGIRGCIGKVVMDQPRYATQTGVS--MHEGLIENSNS 177


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 614 SPAISATSTRSSNPRFHTPTTPDLTSIS 697
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 605 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINP*TPY 718
           +PPS A+  +   +  P    P  P +  +  NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 584 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTK 438
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS   K
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTASARPK 554


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 619 CDLGYINPIIKSPIPYTNHPRLNIHFHQSLNAVL 720
           C L    PI+ + IPY +   LN +  Q+++  L
Sbjct: 66  CKLSICVPIVTTCIPYHSVENLNFNIRQNISTTL 99


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 186  ISLRGFGRRESIDPRREWPKRQKRXKGTISSMNRSSRNPVAK 61
            I+ +G  R+E  DP+++W +++     T+S   R+ R   A+
Sbjct: 976  INQKGHHRKE--DPQKQWQEKELAFSSTLSEAWRTRRKMYAE 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,646
Number of Sequences: 5004
Number of extensions: 65232
Number of successful extensions: 244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)