Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_L16
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 31 0.86
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.86
02_04_0452 + 23044190-23045227 29 3.5
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 29 4.6
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 29 6.1
02_01_0302 - 2021221-2023305 29 6.1
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 6.1
01_05_0227 - 19512866-19514983 29 6.1
08_02_1474 - 27365548-27366054 28 8.1
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 602 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP*TP 715
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 620 AISATSTRSSNPRFHTPTTP 679
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 555 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 677
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 310 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYFVNLEAVVFPSAPSLKI 489
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 490 PVTVDLCWTTADVTVEGVNVLATPSS 567
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 569 EDEGVASTLTPST-VTSAVVQQRSTVTGILRLGAEGKTTASRLTKYAS 429
+DEG LT T +T AV+ +S+ LRL + ++S +TK++S
Sbjct: 483 DDEGDRVLLTTDTDLTGAVLHAKSSGLKSLRLYTDESNSSSEVTKHSS 530
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 611 PSPAISATSTRSSNPRFHTPTTPDLTSISINP*TPY*XEFAPGLSLRVIXGPSAYSPL 784
PSP S+T+ S +P TPT P S + TP A +R P +Y P+
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTY-TPPPPTSADRPDVRFAPPPGSYGPI 575
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 358 TETKSNSVTVQSLPNVSSIIKGYRDAYFVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 531
TE +N V V L SS GY D ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 532 VEGVNVLATPSSSRITIGGLALMHQ 606
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 536 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 444
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_02_1474 - 27365548-27366054
Length = 168
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -2
Query: 714 GVQGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 553
G Q + M G VGVW R D AG G + +G A RG RGG
Sbjct: 71 GGQRVDGMGALCGEVGVWRRKIGDSRRSGGAAGGGAAVGRG--AAVGGRGARGG 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,944,358
Number of Sequences: 37544
Number of extensions: 492808
Number of successful extensions: 1512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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