Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_L14
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0175 + 22966151-22967614                                         31   1.4  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    28   7.6  
04_04_1695 + 35433975-35437040                                         28   7.6  

>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 479 HE*VIRNPVAKHPLQKDRKRGGRNECELIN--VGGRSYPEEHKGGVITRRNRGKALSDKD 306
           HE V   P A+  L   R  GG    E++   VGG  Y  E +GG   ++ R + +SD  
Sbjct: 5   HERVAPPPAAE--LAGRRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGH 62

Query: 305 VRALLL 288
           V A LL
Sbjct: 63  VVAQLL 68


>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -1

Query: 562  EGVWKKRKH*PKEGMAEAAETTKGTISSMNRSSEIQLQNTLYRRIGKEGGETS 404
            E  W++R+   +E    AA+ + G   ++ RSS   +Q   +RR+G +G ++S
Sbjct: 1094 EQKWRRRRR--REEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKGSQSS 1144


>04_04_1695 + 35433975-35437040
          Length = 1021

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  AIRAPRCPTGQTCVSPRRPNPS 129
           A+ AP  P GQT + PR P P+
Sbjct: 224 AVAAPPPPPGQTVIMPRPPGPA 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,401,517
Number of Sequences: 37544
Number of extensions: 438496
Number of successful extensions: 1168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)