Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_L13
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   0.80 
04_01_0530 - 6928528-6929500,6929514-6930964                           31   0.80 
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    31   1.4  
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           28   7.5  
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243...    28   7.5  
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    28   7.5  
04_04_0517 + 25841292-25842099,25842256-25842308                       28   9.9  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 372 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVXG 524
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +2

Query: 50  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQLDSA 190
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+L+ A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +2

Query: 77  CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQLDSAFETC*HS*VRVHRANTGRSSNE 256
           CG        V H  L    V   LP R     +   A   C  + +R HR ++ RS   
Sbjct: 20  CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79

Query: 257 LDRQTTELERRXSGAAALGW 316
             R++  L RR      LGW
Sbjct: 80  CRRRSPRLWRRSGSGFLLGW 99


>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 436 LYPGDGAVIRYTGAESVVPGGGCSR--V*QYHVRPPQAFPRTPA 311
           ++PGDGA   +T   ++VP    +R         P + FP T A
Sbjct: 140 MFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTA 183


>11_06_0655 -
           25923171-25923185,25923208-25923432,25923865-25924324,
           25924330-25924985
          Length = 451

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 436 LYPGDGAVIRYTGAESVVPGGGCSR--V*QYHVRPPQAFPRTPA 311
           ++PGDGA   +T   ++VP    +R         P + FP T A
Sbjct: 119 MFPGDGATATHTTCSTMVPSSATARPVAKSTAAAPERVFPATTA 162


>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 383 PRRWLQPRLAVPRQASTSVPEDTSQVLQ 300
           PRRW + R  +P QA+T V    S +LQ
Sbjct: 33  PRRWTRVRDQLPTQATTKVVGKFSYILQ 60


>04_04_0517 + 25841292-25842099,25842256-25842308
          Length = 286

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 299 AAALGWCPRERLWRPDVVLLNAAATTAGDYTLRARVSNNGSVSWI 433
           A AL  C R  +   DV   N      GD   R R+++ GS +W+
Sbjct: 121 AEALALCHRRGVAHRDVKPDNVLLDATGDGPPRVRLADFGSAAWV 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,942,574
Number of Sequences: 37544
Number of extensions: 473213
Number of successful extensions: 1131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)