Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_L08
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 86 5e-18
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 79 1e-15
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 73 7e-14
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 62 1e-10
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 59 7e-10
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 55 1e-08
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 27 3.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 3.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 5.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 7.8
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 86.2 bits (204), Expect = 5e-18
Identities = 50/168 (29%), Positives = 81/168 (48%)
Frame = +2
Query: 155 VDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXX 334
VDI + +A+ L+ DG K+ + +L + +E S +V E++ F N
Sbjct: 736 VDINDPKAIAEFLFRADGIDKTTLGDYLGEGDEKSISVMHEFIDCLSFINLKFVDALRRL 795
Query: 335 XXXXXXSGETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQ 514
GE Q+ +R+++ FS RY++ NP F + D + L +I+LLNTDLH
Sbjct: 796 LQCFRLPGEAQKIDRIMLKFSERYMKENPSAFANADTAYILAYSIILLNTDLHS-PRIKN 854
Query: 515 RMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIRSQPLQWALDTESAVL 658
+M+ +FI N +NDG + D L +Y I + D E A +
Sbjct: 855 KMTKEDFIKNNRGINDGADLDEDYLGFVYDDILKNEIAMKDDQELAAI 902
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 78.6 bits (185), Expect = 1e-15
Identities = 41/149 (27%), Positives = 72/149 (48%)
Frame = +2
Query: 179 LAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXXXXXXXXSG 358
+AK L +G K+ + +L + N+ + A+ +V H F + G
Sbjct: 735 IAKFLISTEGLDKAVLGEYLGEGNDENIAIMHSFVDHMSFNDIPFVNALRSFLQKFRLPG 794
Query: 359 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 538
E Q+ +R ++ F+ +Y++ N G F + D + L +I++LNTDLH RM+C +FI
Sbjct: 795 EAQKIDRFMLKFAEKYIDDNLGVFKNADTAYILAYSIIMLNTDLHS-PQVKNRMTCQDFI 853
Query: 539 DNLADLNDGDNFPRDTLKHLYHAIRSQPL 625
N ++DG N L +Y I+ +
Sbjct: 854 KNNRGVDDGANLSDSFLTEVYEEIQKNEI 882
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 72.5 bits (170), Expect = 7e-14
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
Frame = +2
Query: 98 SDEGSDGDSLHSFHYSPKAVDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEE 277
++ SDG + + H K D P+ + + + + K + L+K + + +
Sbjct: 560 NESPSDGIAFLTQHSIIKQSDNPTC--IVEFFHSTNRLSKRVLGEFLTKGS--NSHILNA 615
Query: 278 YVKHFEFANXXXXXXXXXXXXXXXXSGETQERERVLVHFSRRYLECNPGTFNSQDAVHTL 457
++ F+F GE+Q ERVL FS Y+ NP + +S+DA L
Sbjct: 616 FISAFDFKGKRIDEALRLLLQSFRLPGESQLIERVLETFSHYYMSANPDSMSSKDAAFVL 675
Query: 458 TCAIMLLNTDLHGCG-GALQRMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIRSQPL 625
+ +I++LNTD H + +RM+ +F N+ +NDG +F R+ L +Y AI+ +
Sbjct: 676 SYSIIMLNTDQHNPNIKSQRRMTLDDFCRNVRGVNDGQDFDRNFLSEIYKAIKENEI 732
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 62.1 bits (144), Expect = 1e-10
Identities = 34/88 (38%), Positives = 52/88 (59%)
Frame = +2
Query: 359 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 538
ETQ+ +RV+ FS+RY ECNPG F+SQD + L ++M+L+TD+ +M+ EFI
Sbjct: 423 ETQQIDRVINAFSKRYFECNPGMFSSQDQCYILVFSLMMLHTDVFNSNNK-HKMTKQEFI 481
Query: 539 DNLADLNDGDNFPRDTLKHLYHAIRSQP 622
NL D+ D + +++ Y I P
Sbjct: 482 -NLCDI---DELAPEIMEYYYDNITFTP 505
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 59.3 bits (137), Expect = 7e-10
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +2
Query: 236 LSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXXXXXXXXSGETQERERVLVHFSRRYLEC 415
L + +++AV + Y+ ++F N GETQE + L FS ++
Sbjct: 359 LVTDKPYNKAVLKHYISLYDFENTDILQSLRMICGNLYVHGETQELDHFLGEFSNQWCRT 418
Query: 416 NP-GTFNSQDAVHTLTCAIMLLNTDLHGCG-GALQRMSCAEFIDN 544
NP G F + VH++ +++LLNTDLH A +RMS +F++N
Sbjct: 419 NPKGLFCNPQIVHSIAFSLLLLNTDLHIAELSASERMSRNQFVEN 463
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 359 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 538
ETQ+ +RVL FS +Y CNP ++S D + LT ++M+L+TD Q+M+ AEFI
Sbjct: 339 ETQQIDRVLSTFSDQYFHCNPDLYDSSDECYILTFSLMILHTDFFNIHNR-QKMTRAEFI 397
Query: 539 DN 544
N
Sbjct: 398 SN 399
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.4
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -2
Query: 573 KLSPSLRSARLSMNSAHDIRCS--APPQPCRSVFSSIMAHVSVCTASWELKVPGLHSRYL 400
K+ +++AR SA R A Q SV ++ H S TA E ++ L R
Sbjct: 123 KIGGIMQAARNDHTSAIRERIDQVASLQEVESVTQALF-HTSKETARMEAEIFELEQRVA 181
Query: 399 LEKCTRTRSRSWVSPESANRARKVRSAASSVVF-ANSKCFT 280
L K ++ SWV E+ RA + V+ NSK T
Sbjct: 182 LAKEAKSVLDSWVHHEANVRAEQQERLVEDVLARVNSKVST 222
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 573 KLSPSLRSARLSMNSAHDIRCSAPPQPC 490
KL P++++ +L + +IRCS QPC
Sbjct: 626 KLVPNIQALKLESSVPLEIRCSNCKQPC 653
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -2
Query: 588 SVSRGKL---SPSLRSARLSMNSAHDIRCSAPPQPCRSVFSSIMAHVSVCTASWELKVPG 418
S SRG+ SPS R RLSM+ + + S P P ++F +++ + + V
Sbjct: 751 STSRGRSFSRSPSYRR-RLSMSCS--VSYSRSPSPLHALFLALLLGIKDLMTLYHTTV-N 806
Query: 417 LHSRYL 400
+H RYL
Sbjct: 807 IHQRYL 812
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/67 (20%), Positives = 28/67 (41%)
Frame = +2
Query: 92 QGSDEGSDGDSLHSFHYSPKAVDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVA 271
Q E + + + FH P+A +P +A YH + + +S + + VA
Sbjct: 109 QNLPEFYNDNLIKHFHKDPEAAKVPHLYSIASSCYHALTTDSKNQTIIVSGESGAGKTVA 168
Query: 272 EEYVKHF 292
+Y+ +
Sbjct: 169 AKYIMRY 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,167
Number of Sequences: 5004
Number of extensions: 40987
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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