Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_L05
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.16
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 30 2.0
12_01_0524 - 4167867-4168445 29 3.5
04_01_0208 + 2596110-2596928 29 3.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.2
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.2
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 346 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 182
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 399 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 551
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -2
Query: 761 SAAPXQTDTXTARXGWRAFRKNXDMPRELPPRHGPGSAPHWTEPSHPTL-----LTRTYC 597
SAA TD T R R N REL G GS+ +EP+ + LT Y
Sbjct: 718 SAADLPTDAATTPA--RRGRYNVTSVRELSAMAGSGSSSS-SEPAPAAVVACHDLTYPYA 774
Query: 596 IFFCQSRNPFRHYCAS 549
+F+C S P Y +
Sbjct: 775 VFYCHSTKPTAAYAVT 790
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 343 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 164
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 163 CEERVDHEGQ*C 128
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>04_01_0208 + 2596110-2596928
Length = 272
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 755 APXQTDTXTARXGWRAFRKNXDMPRELPPRHGPGSAPHWTEPS 627
+P +T+ R GWR +R+ R P HG G W P+
Sbjct: 164 SPCETE---GRPGWRRWRRRWRRRRRDRPVHGRGGTGGWRRPA 203
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 244 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 360
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 250 VHRANTGRSSNELDRQTTELERRGVG 327
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 761 SAAPXQTDTXTARXGWRAFRKNXDMPRELPPRHGPGSAPH 642
S+A T + G++ F+ N + +P R PG APH
Sbjct: 648 SSAGISQTWATMKIGFQNFKANMGSKKFIPLRQDPGFAPH 687
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTP 342
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 425 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 303
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,026,921
Number of Sequences: 37544
Number of extensions: 579393
Number of successful extensions: 1968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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