Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_L04
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   231   9e-62
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   231   1e-61
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (565), Expect = 9e-62
 Identities = 105/191 (54%), Positives = 139/191 (72%)
 Frame = +2

Query: 179 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 358
           YKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAE
Sbjct: 49  YKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAE 108

Query: 359 HMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 538
           H+SE+ +RRFYKNW+             + +    +SI ++ +++ +YCSVVRV+AHTQ+
Sbjct: 109 HLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQI 166

Query: 539 KLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXX 718
           +     QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I        
Sbjct: 167 RKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGN 226

Query: 719 XXXTSRWXTXK 751
              T+RW T +
Sbjct: 227 EGTTARWGTKR 237



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 174
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 757 PVRXTRVLXKXACXGXWHPS 816
           P +  R L K AC G WHP+
Sbjct: 239 PRKTHRGLRKVACIGAWHPA 258


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (564), Expect = 1e-61
 Identities = 104/191 (54%), Positives = 139/191 (72%)
 Frame = +2

Query: 179 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 358
           YKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAE
Sbjct: 49  YKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAE 108

Query: 359 HMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 538
           H+SE+ +RRFYKNW+             + +    +SI ++ +++ +YCSVVRV+AHTQ+
Sbjct: 109 HLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQI 166

Query: 539 KLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXX 718
           +     QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I        
Sbjct: 167 RKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGN 226

Query: 719 XXXTSRWXTXK 751
              T+RW T +
Sbjct: 227 EGTTARWGTKR 237



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 174
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 757 PVRXTRVLXKXACXGXWHPS 816
           P +  R L K AC G WHP+
Sbjct: 239 PRKTHRGLRKVACIGAWHPA 258


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 156
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 503 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 613
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 309 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 461
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,415
Number of Sequences: 5004
Number of extensions: 65967
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)