Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_K21
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 28 1.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 2.4
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 3.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 3.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 4.1
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 4.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.5
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 9.5
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +3
Query: 63 GPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL-----SPDLRNLLRVR 227
GP SN S + TDH++ I KE+D+ + + SP+ + + R
Sbjct: 29 GPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKAPIQKSR 88
Query: 228 NAAIRAY-DRHSNRIQMHRLQREVRSRLSD 314
++++++ + S + + R +R+ R D
Sbjct: 89 GSSLKSHLETESQQTPVKRRRRKATIRNVD 118
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 755 KEPMALPTGYPAES*LNNPEERAVVD 678
+EP + TGYP S N+P + A+ D
Sbjct: 42 REPPTIDTGYPDRSDTNSPTDHALHD 67
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 69 DSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS 197
D +P+ ++ + ++I+T HI+ + + SK+ IRLS
Sbjct: 110 DLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLS 152
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 66 PDSNPSPEDTVESINIITDHISSAIIRSSKEVDVE-DSFHRIRLSPDLRNL 215
P P P D + + ++ H I+ S KE+ E D R+ L L+ L
Sbjct: 865 PIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIREQDKLSRVTLLEYLKQL 915
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 33 PTPLRQSSXYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH 182
P L Y + NP +D + INI+ +S + S K + + FH
Sbjct: 771 PLLLEAVLKYTDEGNPDKQDIPKVINIVRGFLSRLNVESGKAENKFNLFH 820
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 588 PSDALPPITTDEVRDAIHNLQPXK--APGSDGIHNRALFRVIQSRFCRIA--RRERHGF 752
P ++L +T DE+++ IH ++ SDG++ + R S C A + E +GF
Sbjct: 895 PDNSLACLTFDELQENIHEVEDASECVMSSDGLYIFGMRRKSSSGICPTADEKNEDNGF 953
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 59 LRPGFESIPRGHRRIHKHHYRSHL 130
L+ G E + HRR HK Y HL
Sbjct: 1674 LKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 59 LRPGFESIPRGHRRIHKHHYRSHL 130
L+ G E + HRR HK Y HL
Sbjct: 1674 LKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 588 PSDALPPITTDEVRDAIHNLQPXKAPGSDGIHNRALFRVIQS 713
P+D+LP I R H LQ PGS RAL VI S
Sbjct: 852 PADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDS 893
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 270 QMHRLQREVRSRLSDAR--NDNWHSYLEQLAPSHQAYW-RLARTLKSE 404
Q+H+L + +RS + ++R D W + +APS A W L R L E
Sbjct: 33 QIHKLDKAIRSTIDNSRLFYDAWRC-MVCIAPSVTASWISLYRQLPPE 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,118
Number of Sequences: 5004
Number of extensions: 59533
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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