Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_K19
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 29 0.76
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 28 1.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 3.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 9.4
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 9.4
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 595 QTTPDLTSISINPLNARTRRSSAPGLKP--PLSSXAPSAYLTP 717
QTTP ++ + TRR S+ G P P+S P+ +LTP
Sbjct: 159 QTTPQRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPN-FLTP 200
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/111 (22%), Positives = 39/111 (35%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVDLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VGGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTKPPQT 610
V +TP ++ ++ + +T Y I S P T P T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 587
Score = 27.1 bits (57), Expect = 3.1
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVDLEAVVFPSAPSLKIPVTVDLCWTTADVTVG 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTKPPQT 610
V +TP ++ ++ + +T Y I S P T P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 528
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +1
Query: 523 YASSHPPLRSRLHQPDHQIPDSIHQTTPDLTSISINPLNARTRRSSAPGLKPPLSSXAPS 702
+ SHP L+ L+ + T+P I +A T SS + L + PS
Sbjct: 198 FVPSHP-LQELLNAYQALAKGQVATTSPQQIPNQIQQASAATTASSKMTVDTNLGTAQPS 256
Query: 703 AYLTPSS 723
Y TPSS
Sbjct: 257 LYNTPSS 263
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 3.1
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +1
Query: 526 ASSHPPLRSR---LHQPDHQIPDSIHQTTPDLTSISI----NPLNARTRRSSAPGLKPPL 684
A++ PL S+ + P P + DL S+ +PL + T S +P L P
Sbjct: 284 ATNFHPLHSQQPYVDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTN-SPSPPLSSPA 342
Query: 685 SSXAPSAYLTPSSLGM 732
SS +PS L SLG+
Sbjct: 343 SSASPSESLRNESLGI 358
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.1
Identities = 33/119 (27%), Positives = 47/119 (39%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVDLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T E K N PN D V+L + PS PS +PV++ + T
Sbjct: 194 TPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSNLYMPSPPSSALPVSLVSAPSPPRAT 253
Query: 458 VGGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTKPPQT*HPFPSIP 634
V L SS G L+++A + +P + SP T+P T FPS+P
Sbjct: 254 NVAVPCLKHLESSE--QGNNLLINKA-------FTSPRLPSPPQSTRPSST--RFPSVP 301
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 9.4
Identities = 26/70 (37%), Positives = 30/70 (42%)
Frame = +1
Query: 511 RSRPYASSHPPLRSRLHQPDHQIPDSIHQTTPDLTSISINPLNARTRRSSAPGLKPPLSS 690
R ASS+ R P S H TP TS ++ N+ T SSA L PPL
Sbjct: 654 RETSSASSYRSYSQRASTPAVTAKSSFHYATP--TS-GLSNFNSVTPSSSA-SLYPPL-- 707
Query: 691 XAPSAYLTPS 720
PS TPS
Sbjct: 708 -IPSEARTPS 716
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 5 GMTYSWKKLCLXSFLAASAIPSLVNAFSSSKPPQTDN 115
G T+ + + L SAI L N S SKPP D+
Sbjct: 99 GGTHYYLQSLLFEDTTLSAIDKLTNDSSPSKPPHPDS 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,523
Number of Sequences: 5004
Number of extensions: 66142
Number of successful extensions: 263
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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