Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_K11
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   270   1e-73
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   270   2e-73
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    31   0.27 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   4.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  270 bits (663), Expect = 1e-73
 Identities = 122/238 (51%), Positives = 165/238 (69%)
 Frame = +2

Query: 134 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 313
           GYKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48  GYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWA 107

Query: 314 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 493
           EH+SE+ +RRFYKNW+             + +    +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQ 165

Query: 494 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWXREHLEKPIPVDSVFXQDEMIDCIGVPKGKG 673
           ++     QKKAH+MEIQ+NGG++ DKV+W REH EK + + S F Q+EMID IGV +GKG
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225

Query: 674 YKGVTSRWHQXNYPVXNTRVLGKIACXGTWHPSRGSXPGXXGXSKRFLPRXEMKKKXF 847
            +G T+RW     P    R L K+AC G WHP+          +  ++ R ++  K +
Sbjct: 226 NEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283



 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = +1

Query: 7   FSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 132
           F  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  270 bits (662), Expect = 2e-73
 Identities = 121/238 (50%), Positives = 165/238 (69%)
 Frame = +2

Query: 134 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 313
           GYKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48  GYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWA 107

Query: 314 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 493
           EH+SE+ +RRFYKNW+             + +    +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQ 165

Query: 494 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWXREHLEKPIPVDSVFXQDEMIDCIGVPKGKG 673
           ++     QKKAH+MEIQ+NGG++ DKV+W REH EK + + S F Q+EMID IGV +GKG
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225

Query: 674 YKGVTSRWHQXNYPVXNTRVLGKIACXGTWHPSRGSXPGXXGXSKRFLPRXEMKKKXF 847
            +G T+RW     P    R L K+AC G WHP+          +  ++ R ++  K +
Sbjct: 226 NEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283



 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = +1

Query: 7   FSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 132
           F  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL 47


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 623 FXQDEMIDCIGVPKGKGYKGVTSRW 697
           F   + +D  G+ KGKG+ GV  RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 267 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 419
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 461 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 571
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,415
Number of Sequences: 5004
Number of extensions: 69412
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)