Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_K08
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.084
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.59
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 24 4.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.3
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 7.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect(2) = 0.006
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPPP PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = -3
Query: 537 PPPPPPXXXXXXKKXXXXPRXGG----GGXXPPPPPXGGXXXPXXFFXXGXPPPP 385
PPPPPP P GG PPPPP G G PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG-------VAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.45
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 563 PPPXXXXXXPPPPPPP 610
PPP PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPP PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 561 PPPXXXXXXXPPPPPPP 611
PPP PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 537 PPPPPPXXXXXXKKXXXXPRXGGGGXXPPPPP 442
P PPP P G G PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 0.79
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPPP PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPPP PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 561 PPPXXXXXXXPPPPPPP 611
PP PPPPPPP
Sbjct: 767 PPGVAGAGPPPPPPPPP 783
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
P PP PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766
Score = 22.2 bits (45), Expect(2) = 0.006
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 434 PPXGGGGGXXPPPPXRG 484
PP GG PPPP G
Sbjct: 753 PPAPIMGGPPPPPPPPG 769
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.084
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = -3
Query: 549 KXXXPPPPPPXXXXXXKKXXXXPRXGGGGXXPPPPPXGGXXXPXXFFXXG--XPPPP 385
K PPPPPP K PPPPP G PPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Frame = -3
Query: 537 PPPPPPXXXXXXKKXXXXPRXGGGGXXPPPPP-----XGGXXXPXXFFXXGXPPPP 385
PPPPPP K PPPPP G P PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 29.9 bits (64), Expect = 0.45
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -3
Query: 567 GGGXKKKXXXPPPPPPXXXXXXKKXXXXPRXGGGGXXPPPPPXGGXXXPXXFFXXGXPPP 388
G G PPPPPP P G PPPPP P G PP
Sbjct: 328 GNGSSNSSLPPPPPPP----RSNAAGSIPLPPQGRSAPPPPP------PRSAPSTGRQPP 377
Query: 387 P 385
P
Sbjct: 378 P 378
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPPP PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 561 PPPXXXXXXXPPPPPPP 611
PPP PPPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +2
Query: 560 PPPPXXXXXXPP--PPPPP 610
PPPP PP PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 465 GXXPPPPPXGGXXXPXXFFXXGXPPPP 385
G PPPPP G P PPPP
Sbjct: 7 GNPPPPPPPPGFEPPS---QPPPPPPP 30
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 468 GGXXPPPPPXGGXXXPXXFFXXGXPPPP 385
G PPPPP G F PPPP
Sbjct: 7 GNPPPPPPPPG-------FEPPSQPPPP 27
Score = 21.0 bits (42), Expect(2) = 3.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 330 PPXXEXPPPPGG 295
PP PPPP G
Sbjct: 20 PPSQPPPPPPPG 31
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 2 TGNPHHTRLLVEPFVP-ISSRGNAFPAPVTSQPESRXGSGPLPGYYFXLXXKRXFPGVPG 178
TG + P VP S+ + P P TS + S PLP P G
Sbjct: 124 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGG 183
Query: 179 KTPLGAP 199
+ L P
Sbjct: 184 SSSLSTP 190
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 371 GVXLXGGGGXPXXKXXXGXXXPPXGGGGGXXPPPPXRG 484
GV G G P + G P G G PPP G
Sbjct: 99 GVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFG 136
Score = 21.0 bits (42), Expect(2) = 4.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 560 PPPPXXXXXXPPPP 601
PPPP PPP
Sbjct: 129 PPPPAGFGRGAPPP 142
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 560 PPPPXXXXXXPPPPPPP 610
PPPP PP PPP
Sbjct: 48 PPPPSVDHSAPPSGPPP 64
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 35 EPFVPISSRGNAFPAPVTSQPE 100
+PF PIS + A+ P T PE
Sbjct: 116 DPFAPISVKSGAWKKPYTKVPE 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,631
Number of Sequences: 5004
Number of extensions: 34974
Number of successful extensions: 423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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