Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_K07
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 44 3e-05
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 41 2e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 34 0.027
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 33 0.048
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 30 0.44
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 29 0.78
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 28 1.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 28 1.8
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S... 28 1.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.4
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.6
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRS------H----DCYRCGQTGHVASGCTLAPRCAVCASA 389
+C++C +GH+ C ++ +S H +CY CG GH A CT+ +C C
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKI 143
Query: 390 GK---PAEHTSGGKAC 428
G + S G+ C
Sbjct: 144 GHRSFECQQASDGQLC 159
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCT 356
++C+ C +GH C + D CY+C Q GH+A CT
Sbjct: 135 VKCYSCGKIGHRSFECQQASD-GQLCYKCNQPGHIAVNCT 173
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPR---CAVCASAG 392
+C+ C GH C + CY C QTGH AS CT + C C +AG
Sbjct: 18 RCYNCGENGHQARECT----KGSICYNCNQTGHKASECTEPQQEKTCYACGTAG 67
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCTLAP 365
C+ C+ GH + C + + CY CG GH+ C +P
Sbjct: 38 CYNCNQTGHKASEC-TEPQQEKTCYACGTAGHLVRDCPSSP 77
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGKP 398
+ C+ C + GH C V CY CG+ GH + C A +C +P
Sbjct: 116 MNCYACGSYGHQARDCTMGVK----CYSCGKIGHRSFECQQASDGQLCYKCNQP 165
Score = 33.5 bits (73), Expect = 0.036
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 312 CYRCGQTGHVASGCTLAPRCAVCASAGKPA 401
CY CG+ GH A CT C C G A
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKA 48
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCT 356
CF C GH+ CP + D C+RCG H + C+
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACS 116
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +3
Query: 240 QCFRCHALGHVGARC---PSSVDRSHDCYR-CGQTGHVASGC 353
+CF CH GH+ +C P + C + C H+A C
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 297 DRSHDCYRCGQTGHVASGCTLA-PRCAVCASAGKPAEHT 410
+R C+ C Q GH+ C A ++C G EH+
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGS-KEHS 111
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGCTLAPRCAVCASAGKPAEHTS 413
C C +GH CP ++ + + C CG GH+A C + + A + E+ S
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQPPMADSTADREYQS 369
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 33.1 bits (72), Expect = 0.048
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRS-HDCYRCGQTGHVASGCTL 359
+C C LGH+ ARC R C C H +S C L
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPL 166
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQ-TGHVASGCTLAPRCAVCASAGKPAEHTS 413
C C GH+ CP + C CG H++ C +C C G A S
Sbjct: 89 CHNCKGNGHISKDCPHVL-----CTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCS 141
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 266 AQRVAAEAL*PPGLQQVDANNAPPDAQLRHCNNFLRRCYRATNENLAHSSGSGLDRASLD 87
A + A+ A+ P G + NN+ Q+R C+ L+ Y+ E+ A +D + D
Sbjct: 234 APKAASPAVLPEGKPRRRKNNS----QMRFCSTVLKELYKRQYESFAFPFYQPVDPVACD 289
Query: 86 CID 78
C D
Sbjct: 290 CPD 292
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 29.1 bits (62), Expect = 0.78
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 373 PSAPPPGNQRNTLRGARPVQGPRENQGERTSLHPRPHPLLQTEVN 507
P PGN++NT+ RP+ + G + +HP P P L + V+
Sbjct: 138 PFLTSPGNKQNTVDSFRPLPETPVSPG-GSLVHPLPRPPLPSSVS 181
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 485 GCGRGCSDVLSPWFSRGPCTGLAPRSVFRWFPGGGADG 372
GC GCS PW + C G AP + + GGG G
Sbjct: 1372 GCPNGCS---RPWVAEIACVGKAP-NTYNLMLGGGFYG 1405
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 312 CYRCGQTGHVASGC 353
CYRCGQ GH C
Sbjct: 185 CYRCGQKGHWIQAC 198
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHD 311
C+RC GH CP++ D ++D
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYD 207
>SPAC19B12.09 |srp14||signal recognition particle subunit
Srp14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 90 KAGSIKPGSGGMGQVLVRCPIAAAKKIVTVTKL 188
K + G G VL+R AA+KI TV +L
Sbjct: 32 KCNPVDEGEGSSASVLIRAKSGAAEKISTVVEL 64
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 267 HVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPR 368
H G CP R CY+CG+ H C L R
Sbjct: 1794 HTGKACPV---RLSTCYKCGKADHNLRECKLRIR 1824
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 267 HVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPR 368
H G CP R CY+CG+ H C L R
Sbjct: 1794 HTGKACPV---RLSTCYKCGKADHNLRECKLRIR 1824
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 249 RCHALGHVGARCPSSVDRSHDCYRCG 326
RC + H+ A CP S+ C+ CG
Sbjct: 1312 RCCGIKHLPAHCPLSIVPLEICFLCG 1337
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 609 TSSSVHRHARFFIKPRSSLCPTEAGRP 529
T+ ++ ++F+ +P+SS P +GRP
Sbjct: 105 TAKPPYQTSQFYARPQSSYAPPPSGRP 131
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 670 PAPPXPXSXXTNRGPRPPP 614
P PP P GP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,415
Number of Sequences: 5004
Number of extensions: 54077
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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