Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_K07
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.006
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 38 0.006
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 38 0.006
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.006
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 38 0.006
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 38 0.006
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 38 0.006
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 38 0.011
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 38 0.011
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 38 0.011
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.24
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.24
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 33 0.32
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.73
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 0.73
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 0.73
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 0.73
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 0.73
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 0.73
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 0.73
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 0.73
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 31 0.97
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 30 1.7
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 30 1.7
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.9
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 6.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.8
AF067608-7|AAM15538.1| 205|Caenorhabditis elegans Hypothetical ... 28 6.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.8
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 28 9.0
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 242 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 277
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGCT 356
R CF C GH + CP CY C Q GH + CT
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 297 DRSHDCYRCGQTGHVASGCTLAPR----CAVCASAGKPAEHTS 413
+R+++C+ C Q GH +S C PR VC + +P HTS
Sbjct: 155 ERNNNCFNCQQPGHRSSDCP-EPRKEREPRVCYNCQQPG-HTS 195
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 453 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 488
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 453 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 488
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 242 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 277
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGCT 356
R CF C GH + CP CY C Q GH + CT
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 297 DRSHDCYRCGQTGHVASGCTLAPR----CAVCASAGKPAEHTS 413
+R+++C+ C Q GH +S C PR VC + +P HTS
Sbjct: 155 ERNNNCFNCQQPGHRSSDCP-EPRKEREPRVCYNCQQPG-HTS 195
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 242 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 277
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGCT 356
R CF C GH + CP CY C Q GH + CT
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 297 DRSHDCYRCGQTGHVASGCTLAPR----CAVCASAGKPAEHTS 413
+R+++C+ C Q GH +S C PR VC + +P HTS
Sbjct: 155 ERNNNCFNCQQPGHRSSDCP-EPRKEREPRVCYNCQQPG-HTS 195
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRSHD-CYRCGQTGHVASGC 353
+C+ C GH+ C S CY+C +TGH++ C
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVD--------RSHDCYRCGQTGHVASGC 353
C++C GH+ CP+ CY C +TGH + C
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 22/72 (30%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRS-----------------HDCYRCGQTGHVASGCTLA--- 362
C+ C GH CPS+ CY CG++GH++ CT +
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSA 128
Query: 363 --PRCAVCASAG 392
RC C G
Sbjct: 129 EEKRCYQCQETG 140
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHD---------CYRCGQTGHVASGCTLA 362
C+ C GH CP CY CG GH + C A
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSA 85
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 LQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
++CF C GH A CP + C+ CG+ GH ++ C
Sbjct: 453 MKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNEC 488
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 231 RRLQCFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
R CF C GH CP CY C Q GH + C
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 210 RVHLLEARR---LQCFRCHALG-HVGARCPSSVDRSHDCYRCGQTGHVASGC 353
R+H L ++ L+CFRC H CP+ + CY CG HV+S C
Sbjct: 99 RIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 150
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 210 RVHLLEARR---LQCFRCHALG-HVGARCPSSVDRSHDCYRCGQTGHVASGC 353
R+H L ++ L+CFRC H CP+ + CY CG HV+S C
Sbjct: 130 RIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 210 RVHLLEARR---LQCFRCHALG-HVGARCPSSVDRSHDCYRCGQTGHVASGC 353
R+H L ++ L+CFRC H CP+ + CY CG HV+S C
Sbjct: 130 RIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 210 RVHLLEARR---LQCFRCHALG-HVGARCPSSVDRSHDCYRCGQTGHVASGC 353
R+H L ++ L+CFRC H CP+ + CY CG HV+S C
Sbjct: 130 RIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHD--CYRCGQTGHVASGC 353
CF C GH A CP S D C++CG H C
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHEC 269
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Frame = +3
Query: 234 RLQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC--TLAPR--CAVCASAG 392
R C C LGH + C C CG GH A C PR C C G
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEG 648
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
C C GH+ C C C Q GH AS C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
C C GH C C CGQ GH A C
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Frame = +3
Query: 234 RLQCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC--TLAPR--CAVCASAG 392
R C C LGH + C C CG GH A C PR C C G
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEG 648
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
C C GH+ C C C Q GH AS C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
C C GH C C CGQ GH A C
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 32.7 bits (71), Expect = 0.32
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDR 302
QCF C +GH+ CP +DR
Sbjct: 609 QCFTCGEMGHISTYCPKRIDR 629
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 700 APAEPGWGFLPAPPXPXSXXTNRGPRPPP 614
AP EPG P PP P N GP PP
Sbjct: 219 APGEPGDSGPPGPPGPPGAPGNDGPPGPP 247
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 700 APAEPGWGFLPAPPXPXSXXTNRGPRPPP 614
AP EPG P PP P N GP PP
Sbjct: 214 APGEPGDSGPPGPPGPPGAPGNDGPPGPP 242
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 195 GWSVVRVHLLEARRLQCFRCHALGHVGARCPSSVDRSHD 311
GW + L+ R CFRC+ +GH+ CP + + +
Sbjct: 663 GWHMASCFKLKNRA--CFRCNEMGHIAWNCPKKNENTSE 699
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
+C C G A C +R+ C+RC + GH+A C
Sbjct: 655 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 195 GWSVVRVHLLEARRLQCFRCHALGHVGARCPSSVDRSHD 311
GW + L+ R CFRC+ +GH+ CP + + +
Sbjct: 566 GWHMASCFKLKNRA--CFRCNEMGHIAWNCPKKNENTSE 602
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
+C C G A C +R+ C+RC + GH+A C
Sbjct: 558 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 195 GWSVVRVHLLEARRLQCFRCHALGHVGARCPSSVDRSHD 311
GW + L+ R CFRC+ +GH+ CP + + +
Sbjct: 577 GWHMASCFKLKNRA--CFRCNEMGHIAWNCPKKNENTSE 613
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 240 QCFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
+C C G A C +R+ C+RC + GH+A C
Sbjct: 569 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 604
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 700 APAEPGWGFLPAPPXPXSXXTNRGPRPPP 614
AP EPG P PP P N GP PP
Sbjct: 214 APGEPGDSGPPGPPGPPGAPGNDGPPGPP 242
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 ARRLQCFRCHALGHVGARCPSS--VDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGKPA 401
A +C C + H CP + V C CG GH++ C P+ + AG
Sbjct: 425 ANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCK-NPKGMYASEAGMDD 483
Query: 402 EHTS 413
E+++
Sbjct: 484 EYSA 487
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 ARRLQCFRCHALGHVGARCPSS--VDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGKPA 401
A +C C + H CP + V C CG GH++ C P+ + AG
Sbjct: 425 ANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCK-NPKGMYASEAGMDD 483
Query: 402 EHTS 413
E+++
Sbjct: 484 EYSA 487
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 361 HRDAPSAPP---PGNQRNTLRGARPVQGPRENQGERTSLHP 474
HRD P PP P Q + RGA P + PR +G R S P
Sbjct: 307 HRDEP--PPRRAPQEQPSRRRGASPPEPPRRQEGARRSEEP 345
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 361 HRDAPSAPP---PGNQRNTLRGARPVQGPRENQGERTSLHP 474
HRD P PP P Q + RGA P + PR +G R S P
Sbjct: 415 HRDEP--PPRRAPQEQPSRRRGASPPEPPRRQEGARRSEEP 453
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
CF C GH C + +C CG H A+ C
Sbjct: 204 CFNCKKYGHRATECSAP---QRECANCGDPNHRANEC 237
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 303 SHDCYRCGQTGHVASGCTLAPRCAVCASAGKP 398
S+ C+ C + GH A+ C+ AP+ CA+ G P
Sbjct: 201 SNTCFNCKKYGHRATECS-APQ-RECANCGDP 230
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGC 353
CF C GH C + +C CG H A+ C
Sbjct: 204 CFNCKKYGHRATECSAP---QRECANCGDPNHRANEC 237
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 303 SHDCYRCGQTGHVASGCTLAPRCAVCASAGKP 398
S+ C+ C + GH A+ C+ AP+ CA+ G P
Sbjct: 201 SNTCFNCKKYGHRATECS-APQ-RECANCGDP 230
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 727 GXPRTQQXTAPAEPGWGFLPAPPXP-XSXXTNRGPRP 620
G P T+ AP EPG P PP P GP P
Sbjct: 198 GAPGTKTTNAPGEPGPAGPPGPPGPNGEAGAGSGPGP 234
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -2
Query: 727 GXPRTQQXTAPAEPGWGFLPAPPXPXSXXTNRGPRPPPHDFLLGSSACPVLHKAPVFLVP 548
G P + PG G +P PP P P PPP + SA P ++ P P
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY---PSAGPGMYPPPPPSRP 371
Query: 547 DGGWTSIGVVVSP 509
+ G++ P
Sbjct: 372 PAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -2
Query: 727 GXPRTQQXTAPAEPGWGFLPAPPXPXSXXTNRGPRPPPHDFLLGSSACPVLHKAPVFLVP 548
G P + PG G +P PP P P PPP + SA P ++ P P
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY---PSAGPGMYPPPPPSRP 381
Query: 547 DGGWTSIGVVVSP 509
+ G++ P
Sbjct: 382 PAPPSGHGMIPPP 394
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 270 VGARCPSSVDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGK--PAEHTSGGKAC 428
+G R SVD+S RC ++ + G P VC P ++ G+ C
Sbjct: 516 IGLRGEPSVDKSGQLIRCERSSDCSMGHMCDPNTHVCCKGTNRCPKDYVETGEQC 570
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 697 PAEPGWGFLPAPPXPXSXXTNRGPRPPPHDFLLGSSACPVLHKAPVFLVP 548
P P G P PP P GP PPP + A PV+ P +L P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA-PVI---PDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 697 PAEPGWGFLPAPPXPXSXXTNRGPRPPPHDFLLGSSACPVLHKAPVFLVP 548
P P G P PP P GP PPP + A PV+ P +L P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA-PVI---PDYLPP 806
>AF067608-7|AAM15538.1| 205|Caenorhabditis elegans Hypothetical
protein B0511.9b protein.
Length = 205
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 376 SAPPPGNQRNTLRGA----RPVQGPRENQGERTSLHPRPHPLLQTEV 504
S PP G R LR A R V GP + RTS+ P + TEV
Sbjct: 52 SEPPRGITRRNLRSADRKNRDVPGPSTGECTRTSIAPNRCEMSFTEV 98
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 697 PAEPGWGFLPAPPXPXSXXTNRGPRPPPHDFLLGSSACPVLHKAPVFLVP 548
P P G P PP P GP PPP + A PV+ P +L P
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA-PVI---PDYLPP 389
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 27.9 bits (59), Expect = 9.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 312 CYRCGQTGHVASGC 353
CY+CG+ GH A+ C
Sbjct: 252 CYKCGEKGHYANRC 265
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 243 CFRCHALGHVGARCPSSVDRS 305
C++C +GHV CP S S
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNS 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,840
Number of Sequences: 27780
Number of extensions: 387306
Number of successful extensions: 1909
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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