Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_K04
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   316   1e-86
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   314   7e-86
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.1  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    29   3.4  
05_04_0324 - 20273797-20274261                                         29   4.5  
11_01_0710 - 5830475-5830595,5831498-5834124                           29   5.9  
03_05_0021 + 19883445-19883523,19884031-19884449,19884489-19884725     29   5.9  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  316 bits (777), Expect = 1e-86
 Identities = 147/259 (56%), Positives = 189/259 (72%), Gaps = 2/259 (0%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 585
                      +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185

Query: 586 LNGGTIEDKVKWAXEHLEKPIPVDSVFXQXEMIDCIGVXKGXDTKVSLLVGXQXXTP*K- 762
           +NGGTI DKV +  +  EK IPVD+VF + EMID IGV KG   +  +        P K 
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 763 HKGFRKIACXGXWXPSRGS 819
           H+G RK+AC G W P+R S
Sbjct: 246 HRGLRKVACIGAWHPARVS 264


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  314 bits (770), Expect = 7e-86
 Identities = 146/259 (56%), Positives = 188/259 (72%), Gaps = 2/259 (0%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 585
                      +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185

Query: 586 LNGGTIEDKVKWAXEHLEKPIPVDSVFXQXEMIDCIGVXKGXDTKVSLLVGXQXXTP*K- 762
           +NGGTI DKV +  +  EK IPVD+VF + EMID IGV KG   +  +        P K 
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 763 HKGFRKIACXGXWXPSRGS 819
           H+G RK+AC G W P+R S
Sbjct: 246 HRGLRKVACIGAWHPARVS 264


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 468 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 584
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 568 HIMEIQLNGGTIEDKVKWAXEHLEKPIPVDS 660
           H++E + N  ++++K+K   +H E  +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 127 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 300
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 301 VGYIETPHGLRAL 339
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 689 QSIISXWXNTESTGIGFSRCSXAHFTLSSMVPPLSWISIM 570
           +S+IS W  +  TG   S CS  +  +     PLS  S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689


>03_05_0021 + 19883445-19883523,19884031-19884449,19884489-19884725
          Length = 244

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +1

Query: 448 DELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAX 627
           DE  R ++  D   M+R+ + V    +   KLLKQ      ++   +  G I   + W  
Sbjct: 74  DEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAI--GVI--TLSW-K 128

Query: 628 EHLEKPIPVDSVFXQXEMIDCIGVXKG 708
           EH  +P P D V    ++ D +G   G
Sbjct: 129 EHYVEPRPEDLVKLMSDLEDLVGFLSG 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,063,184
Number of Sequences: 37544
Number of extensions: 460567
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)