Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_K02
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.6  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.9  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 509  DHXXQHGPPRLEPPRSXYSFAGAPFPPRAEVATPP 405
            DH        L PPRS  S +G P P    V  PP
Sbjct: 1010 DHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 205 TANSMGNNVAIYFSCTTSFGMKHLPYPNPFYSNLLHTLCKSF 80
           T NS    +  Y+ C     + H P    F +NL H   +SF
Sbjct: 72  TNNSYSAILISYYRCIFIISLFHRPLTIHFLTNLTHGCTRSF 113


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 488 PPRLEPPRSXYSFAGAPFPPRAEVATPP 405
           PP   PPRS  +    P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 417 RYATGNRQRAPPPSRSQ 367
           RY++  R R+PPPSR +
Sbjct: 91  RYSSVGRSRSPPPSRER 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,361
Number of Sequences: 5004
Number of extensions: 37313
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)