Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_K01
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   6.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.7  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 147 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 257
           + +QP+  K  PSP   F L+   + RS ET+L  +A
Sbjct: 47  IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 133 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 309
           + P PS    S +    L   +    S+ +   R+P  RS P+TP    TR      ++ 
Sbjct: 75  SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133

Query: 310 DFRPQLPPWDSGSGS 354
           DF P   P++    S
Sbjct: 134 DFTPPSSPFEDMQAS 148


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 345 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 440
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 371 PHEKHSGALQKGSPSEHHAEHPSPD 445
           PHEKH   L++ S  + H E  S D
Sbjct: 163 PHEKHFRPLRQRSSVDDHQEFESED 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,440
Number of Sequences: 5004
Number of extensions: 54744
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)