Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_J06
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    28   1.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.5  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   3.3  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   4.3  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.3  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 547 DARQREVLSYDRDEGGALLVESRATRQRVFRCAVMGRTEDRAPSTATKKVLPS 389
           D     +LS D DEG A+  + + T+Q+  + +V GR   R PS+ +   L S
Sbjct: 96  DGIMSPILSLDIDEGKAIAPKKKQTKQK--KPSVRGR-RGRKPSSLSSSTLHS 145


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 603 SQKSSIAFQDASLPSIVATTRGSERSSPMTATRAARCSSNPEQRA 469
           S + ++AFQ   L  +++  R +  S+P T  R++    NP +RA
Sbjct: 218 SPEDTVAFQSVELQKVISNNRLNSSSTPPT-PRSSSSIFNPFRRA 261


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = -2

Query: 449 RNGTHGRPCALDRDKEGSALQIRPEQSHVSVR*ARVPQLVNQPLVPHTVEGLLDIEKDR- 273
           R  + G  CA     E  A+++   QS   +     P +V +P   +  + +  + K   
Sbjct: 144 RASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAP-MVRRPAATNCAKFVFLVTKQEA 202

Query: 272 -DRVLA*VSPVCQVMQDTGQLQSRRVAASKAELLRPEENIRRY 147
            D  +   + +    QD+ +L S  +  S AE+L+ +  IR Y
Sbjct: 203 IDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHY 245


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 80  QLPTDYLALARGQVVRAAAPEENIAVYS 163
           QLP+DYL +  G++ +A+ P  +I + S
Sbjct: 293 QLPSDYLEVNDGKIPKASEPYTSIPLVS 320


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 282 LDIEKAFDRVWHEGLVHKLRDAGL 353
           + I  A+D +  EGL+H LR++G+
Sbjct: 146 MTIVTAYDTLGEEGLLHSLRESGV 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,641
Number of Sequences: 5004
Number of extensions: 54126
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)