Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_J06
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 44 1e-04
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 43 3e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 40 0.003
02_03_0347 - 17999780-18000592,18000656-18003019 31 1.1
09_04_0430 + 17502387-17503505 31 1.5
06_03_1447 + 30233090-30233776 30 2.6
06_03_1436 + 30148325-30149011 30 2.6
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 29 4.6
03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966 29 6.0
06_01_0783 + 5857950-5857979,5859474-5860424 28 8.0
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 28 8.0
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 8.0
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Frame = +3
Query: 36 IIVLPKPGKDRRKP-SSYRPITLLSHVGKLFERLLLRRISPYI--LLRPEQFGFRSGHST 206
I+++PK KD+ YRPI+L + V K+ + L+ R+ P + L+ EQ F G
Sbjct: 952 IVLIPK--KDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMI 1009
Query: 207 T---LQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPH 359
T L H + + + A LD+ KA+DRV L L G H
Sbjct: 1010 TDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAH 1063
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 43.2 bits (97), Expect = 3e-04
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Frame = +3
Query: 36 IIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYIL--LRPEQFGFRSGHSTT 209
I+++ KPGK+ YRPI+L + K+ ++L R+ L + +Q GF G +
Sbjct: 973 IVLIQKPGKENTV-DGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGRCIS 1031
Query: 210 LQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYL 389
L + T+ V LD KAFD V L L G P + + L
Sbjct: 1032 ENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLL 1091
Query: 390 EGRTFFVAVEG 422
V + G
Sbjct: 1092 SSSKSAVLLNG 1102
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +3
Query: 78 SSYRPITLLSHVGKLFERLLLRRISPYIL--LRPEQFGFRSGHSTTLQLTRVLHHLADRR 251
+ +RPI+L+ K+ +LL R+ IL + +GF G + ++ +
Sbjct: 386 NDFRPISLMGISLKIVTKLLAGRLQGVILKLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQ 445
Query: 252 NSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLP 356
S + V + LD EKAFD + H ++ ++ G P
Sbjct: 446 QSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFP 480
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 583 LPGRVAAEHRSHDARQREVLSYDRDEGGALLVESRATRQRVFRCAVMGRTEDRAPS 416
+PG A R D R+++ L++ DEG L VE + R R A + E APS
Sbjct: 412 VPGSAARSGRQ-DRRRKKRLAFSDDEGHVLTVEGASRATRKGRPASDRKKEAEAPS 466
>09_04_0430 + 17502387-17503505
Length = 372
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 49 PNPARTGESPPVTDRLPCSRT-WASCSSGCS*GEYRRIFSS 168
P P T +PP+ P S T W C S C +Y R++ +
Sbjct: 209 PQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYDRLYEA 249
>06_03_1447 + 30233090-30233776
Length = 228
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 200 LDDSATDPCPASLGRPAKLRPIHGRGPSRYR 292
LDD +P P SL R A+L+ R P R+R
Sbjct: 92 LDDFVLEPSPESLARGARLQQRRRRRPRRHR 122
>06_03_1436 + 30148325-30149011
Length = 228
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 200 LDDSATDPCPASLGRPAKLRPIHGRGPSRYR 292
LDD +P P SL R A+L+ R P R+R
Sbjct: 92 LDDFVLEPSPESLARGARLQQRRRRRPRRHR 122
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -2
Query: 326 QPLVPHTVEGLL-DIEK--DRDRVLA*VSPVCQVMQDTGQLQSRRVAASKAELLR 171
QP V HT+ +L ++ K D D V+A +C+ + + +L S V+A EL++
Sbjct: 357 QPCVAHTINLMLKEVGKMADHDMVIASGRKICRWLYNHSKLHSMMVSAIGGELVK 411
>03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966
Length = 423
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 285 DIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSS 434
D E+ D VW H L + H HV + +GRT FV++ G S+
Sbjct: 214 DQEEEEDFVWGW---HALPNPPFQHEHVTSYAVHRDGRTIFVSIGGESSA 260
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 113 GQVVRAAAPEENIAVYSP--QAGAIRL*KRPLDDSATDPCPASLGRPAKLRP 262
G VV AAPEEN+ + G IR K PL +A + RP K P
Sbjct: 78 GTVVDKAAPEENLTTADELFEKGKIRPLKAPLPKTADELFDKGKVRPLKPPP 129
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 370 DCSGRIWRAEPSLSRSRAHGLPCV 441
DC+GR+WRA L R RA G+ V
Sbjct: 165 DCAGRVWRAAEEL-RLRAAGVSLV 187
>03_01_0149 -
1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 556 RSHDARQREVLSY-DRDEGGALLVESRATRQRVFRCAVMGRTED 428
R H+ +RE + +RD GG ++ S Q R A RT+D
Sbjct: 197 RKHEHHRREARGFWERDRGGKMVFRSGTWEQESDREAKRARTQD 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,499,370
Number of Sequences: 37544
Number of extensions: 467876
Number of successful extensions: 1909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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