Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_J06
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 288 YREGPRPCIGLSFAGLPSDAG 226
           + +GPR CIG  FA   +  G
Sbjct: 437 FGDGPRNCIGARFAVYQTKVG 457


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  ITLLSHVGKLFERLLLRRISPYIL 164
           ITL+S  G+L  RLL   I P I+
Sbjct: 93  ITLISFPGELLMRLLKMFILPLIV 116


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 573 RPGRRCSTSASXPSR 617
           RP R CST+   PS+
Sbjct: 584 RPQRACSTTGGVPSK 598


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 60  KDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPE 176
           K RRK    +    +    KLF R L RRI   +L   E
Sbjct: 439 KPRRKFHFKQIARAVKFTSKLFGRALSRRIKATVLFATE 477


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 432  SVRPITAQRNTRWRVALDSTSNAPP 506
            ++RP++ ++ TR  +  D+TS A P
Sbjct: 1049 NLRPLSMEKGTRPMIPDDNTSLALP 1073


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 100 CSRTWASCSSGC 135
           CSR W   S+GC
Sbjct: 21  CSRDWFRISAGC 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,187
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)